Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   Vt282_RS07215 Genome accession   NZ_AP019649
Coordinates   1562303..1563334 (+) Length   343 a.a.
NCBI ID   WP_415663445.1    Uniprot ID   -
Organism   Vibrio taketomensis strain C4III282     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1557303..1568334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vt282_RS07190 - 1557336..1557656 (+) 321 WP_162046321.1 STAS domain-containing protein -
  Vt282_RS07195 - 1557674..1558585 (+) 912 WP_162062979.1 OmpA family protein -
  Vt282_RS07200 - 1558575..1560668 (+) 2094 WP_162062980.1 SLBB domain-containing protein -
  Vt282_RS07205 - 1560668..1561360 (+) 693 WP_162062981.1 CpsD/CapB family tyrosine-protein kinase -
  Vt282_RS07210 - 1561481..1561837 (+) 357 WP_162062982.1 Hpt domain-containing protein -
  Vt282_RS21695 - 1561995..1562189 (+) 195 WP_415663418.1 response regulator -
  Vt282_RS07215 luxO 1562303..1563334 (+) 1032 WP_415663445.1 sigma-54 interaction domain-containing protein Regulator
  Vt282_RS07220 - 1563312..1564352 (+) 1041 WP_167515602.1 glycosyltransferase family 4 protein -
  Vt282_RS07225 - 1564495..1565721 (+) 1227 WP_162046316.1 glycosyltransferase -
  Vt282_RS07230 - 1565708..1566901 (+) 1194 WP_162062983.1 glycosyltransferase -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 38441.72 Da        Isoelectric Point: 6.3106

>NTDB_id=73011 Vt282_RS07215 WP_415663445.1 1562303..1563334(+) (luxO) [Vibrio taketomensis strain C4III282]
MQGLYKIIDAVAPTSASVFIIGDSGTGKEVCANAIHDESRRADQPFVAINCGAIPKDLMESEIFGHVKGAFTGATSDRKG
AATLANGGTLFLDELCEMELEMQKKLLRFLQTGTFTPLGASKEQKVDVRIICATNRDPLLEVEEGRFREDLYYRVHVVPI
EMPPLRDRGNDILTLAKHFMQQYAKEDNKRFRTINKDAEILLKRYQWPGNVRQLQNIMRNIVVLNDDAQLKADHLPAQFH
RSPKKSASNTIQPAAQVQAPVVETGSTHSVDLNHAPQNQGDSVTNKRIAIRPMWQIEREAIQQAIEYCDGNVINAAVLLE
LSPSTVYRKKQAWEAEDEQSFIE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=73011 Vt282_RS07215 WP_415663445.1 1562303..1563334(+) (luxO) [Vibrio taketomensis strain C4III282]
ATGCAAGGGCTATATAAAATCATTGATGCTGTCGCCCCAACTTCAGCCAGTGTTTTCATTATTGGAGACAGCGGTACGGG
TAAAGAAGTGTGTGCAAACGCCATTCATGACGAAAGTCGCCGAGCTGATCAGCCATTTGTCGCCATTAACTGTGGCGCGA
TACCCAAAGATTTGATGGAAAGTGAAATCTTTGGCCATGTTAAAGGCGCATTTACCGGCGCAACCAGCGATCGAAAAGGC
GCAGCAACGCTGGCAAACGGTGGTACGTTATTTCTCGATGAGCTATGTGAAATGGAATTGGAAATGCAGAAAAAATTACT
GCGCTTTTTGCAAACCGGTACCTTCACTCCCCTTGGCGCGTCAAAAGAACAAAAAGTGGATGTACGAATTATCTGCGCCA
CCAACCGTGACCCTTTGCTAGAAGTTGAAGAAGGTCGATTCCGTGAAGACTTGTACTATCGCGTACATGTGGTTCCGATT
GAAATGCCGCCTTTGCGTGATCGAGGTAACGACATCCTCACACTCGCTAAACACTTTATGCAGCAATACGCCAAAGAGGA
CAACAAGCGCTTCCGAACAATCAACAAAGACGCCGAGATTTTGTTAAAACGCTACCAATGGCCGGGTAACGTGCGCCAAC
TGCAAAACATTATGCGTAATATTGTGGTGCTAAATGATGATGCTCAGCTAAAAGCGGATCATCTTCCTGCACAGTTCCAT
CGCTCACCCAAAAAATCGGCCAGCAACACGATTCAACCAGCCGCACAGGTTCAAGCGCCTGTAGTGGAAACGGGGTCTAC
TCACTCTGTCGATCTCAATCATGCGCCTCAAAATCAAGGTGACAGTGTCACCAATAAACGCATTGCGATTCGTCCTATGT
GGCAGATTGAGCGTGAAGCCATTCAACAAGCCATTGAGTATTGCGATGGCAATGTTATTAATGCCGCAGTATTGCTCGAG
CTAAGCCCCTCAACGGTCTATCGTAAAAAGCAGGCATGGGAAGCCGAAGATGAGCAGTCCTTCATCGAATGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(1-161)

Bacterial regulatory protein, Fis family (HTH_8)

(293-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

52.695

97.376

0.513

Multiple sequence alignment