Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   LDO00_RS17780 Genome accession   NZ_AP024521
Coordinates   3661836..3662513 (+) Length   225 a.a.
NCBI ID   WP_000178161.1    Uniprot ID   -
Organism   Escherichia coli strain E189     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3656836..3667513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO00_RS17745 (NIAHE189_34100) gspG 3657316..3657753 (+) 438 WP_001202874.1 type II secretion system major pseudopilin GspG -
  LDO00_RS17750 (NIAHE189_34110) gspH 3657761..3658270 (+) 510 WP_001076044.1 type II secretion system minor pseudopilin GspH -
  LDO00_RS17755 (NIAHE189_34120) gspI 3658267..3658644 (+) 378 WP_001041743.1 type II secretion system minor pseudopilin GspI -
  LDO00_RS17760 (NIAHE189_34130) gspJ 3658637..3659224 (+) 588 WP_001402582.1 type II secretion system minor pseudopilin GspJ -
  LDO00_RS17765 (NIAHE189_34140) gspK 3659217..3660200 (+) 984 WP_001058522.1 type II secretion system minor pseudopilin GspK -
  LDO00_RS17770 (NIAHE189_34150) gspL 3660215..3661378 (+) 1164 WP_001115238.1 type II secretion system protein GspL -
  LDO00_RS17775 (NIAHE189_34160) gspM 3661375..3661836 (+) 462 WP_001295161.1 type II secretion system protein GspM -
  LDO00_RS17780 (NIAHE189_34170) pilD 3661836..3662513 (+) 678 WP_000178161.1 prepilin peptidase GspO Machinery gene
  LDO00_RS17785 (NIAHE189_34180) bfr 3662542..3663018 (-) 477 WP_000675504.1 bacterioferritin -
  LDO00_RS17790 (NIAHE189_34190) bfd 3663090..3663284 (-) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  LDO00_RS17795 (NIAHE189_34200) chiA 3663453..3666146 (-) 2694 WP_001402584.1 bifunctional chitinase/lysozyme -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24898.78 Da        Isoelectric Point: 7.9563

>NTDB_id=73006 LDO00_RS17780 WP_000178161.1 3661836..3662513(+) (pilD) [Escherichia coli strain E189]
MTMLLPLFILVGFIAGYFVNAIAYHLSPLEDKTALTFRQVLVHFRQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=73006 LDO00_RS17780 WP_000178161.1 3661836..3662513(+) (pilD) [Escherichia coli strain E189]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGGTTATTTTGTTAATGCCATCGCCTATCACCTCTC
GCCGTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGGTTCATTTCAGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGTGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATCGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGTACTCACGCTCAGTGTTATTGATTTTCGCACTCAACTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTATGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTAGCGG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCATGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGGTATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

32.946

100

0.378