Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   N4229_RS14885 Genome accession   NZ_CP104491
Coordinates   2983070..2983675 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica strain SalSpp_sample_05_No.1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2978070..2988675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4229_RS14870 (N4229_14870) helD 2978287..2980341 (-) 2055 WP_023228225.1 DNA helicase IV -
  N4229_RS14875 (N4229_14875) - 2980465..2980911 (+) 447 WP_001261222.1 YccF domain-containing protein -
  N4229_RS14880 (N4229_14880) yccS 2980930..2983083 (+) 2154 WP_000950876.1 YccS family putative transporter -
  N4229_RS14885 (N4229_14885) sxy/tfoX 2983070..2983675 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  N4229_RS14890 (N4229_14890) sulA 2983892..2984401 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  N4229_RS14895 (N4229_14895) ompA 2984758..2985810 (+) 1053 WP_023259507.1 porin OmpA -
  N4229_RS14900 (N4229_14900) matP 2985882..2986334 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  N4229_RS14905 (N4229_14905) - 2986520..2988280 (+) 1761 WP_000156448.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=730010 N4229_RS14885 WP_001202375.1 2983070..2983675(-) (sxy/tfoX) [Salmonella enterica strain SalSpp_sample_05_No.1]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=730010 N4229_RS14885 WP_001202375.1 2983070..2983675(-) (sxy/tfoX) [Salmonella enterica strain SalSpp_sample_05_No.1]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTCATGAAATGCGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTCGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751