Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   N4230_RS14585 Genome accession   NZ_CP104482
Coordinates   2925934..2926539 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica strain SalSpp_sample_08_No.4     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2920934..2931539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4230_RS14570 (N4230_14570) helD 2921151..2923205 (-) 2055 WP_017465794.1 DNA helicase IV -
  N4230_RS14575 (N4230_14575) - 2923329..2923775 (+) 447 WP_001261222.1 YccF domain-containing protein -
  N4230_RS14580 (N4230_14580) yccS 2923794..2925947 (+) 2154 WP_000950861.1 YccS family putative transporter -
  N4230_RS14585 (N4230_14585) sxy/tfoX 2925934..2926539 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  N4230_RS14590 (N4230_14590) sulA 2926756..2927265 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  N4230_RS14595 (N4230_14595) ompA 2927622..2928674 (+) 1053 WP_001670727.1 porin OmpA -
  N4230_RS14600 (N4230_14600) matP 2928746..2929198 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  N4230_RS14605 (N4230_14605) - 2929384..2931144 (+) 1761 WP_000156454.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=729941 N4230_RS14585 WP_001202375.1 2925934..2926539(-) (sxy/tfoX) [Salmonella enterica strain SalSpp_sample_08_No.4]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=729941 N4230_RS14585 WP_001202375.1 2925934..2926539(-) (sxy/tfoX) [Salmonella enterica strain SalSpp_sample_08_No.4]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTCTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTCATGAAATGCGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGTCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751