Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   Vt282_RS00895 Genome accession   NZ_AP019649
Coordinates   189354..190361 (+) Length   335 a.a.
NCBI ID   WP_162047363.1    Uniprot ID   -
Organism   Vibrio taketomensis strain C4III282     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 184354..195361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vt282_RS00875 metJ 184446..184763 (+) 318 WP_162047367.1 met regulon transcriptional regulator MetJ -
  Vt282_RS00880 - 184873..186147 (-) 1275 WP_162062328.1 malic enzyme-like NAD(P)-binding protein -
  Vt282_RS00885 rpmE 186373..186594 (-) 222 WP_162047365.1 50S ribosomal protein L31 -
  Vt282_RS00890 priA 186875..189076 (+) 2202 WP_162062329.1 primosomal protein N' -
  Vt282_RS00895 cytR 189354..190361 (+) 1008 WP_162047363.1 DNA-binding transcriptional regulator CytR Regulator
  Vt282_RS00900 - 190578..191114 (+) 537 WP_162047362.1 SPOR domain-containing protein -
  Vt282_RS00905 galE 191181..192197 (-) 1017 WP_162062330.1 UDP-glucose 4-epimerase GalE -
  Vt282_RS00910 hslV 192464..193006 (+) 543 WP_162047360.1 ATP-dependent protease subunit HslV -
  Vt282_RS00915 hslU 193047..194381 (+) 1335 WP_162047359.1 HslU--HslV peptidase ATPase subunit -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36840.48 Da        Isoelectric Point: 6.6380

>NTDB_id=72994 Vt282_RS00895 WP_162047363.1 189354..190361(+) (cytR) [Vibrio taketomensis strain C4III282]
MATMKDVAQLAGVSTATVSRALMNPEKVSSATRKRVEDAVLEAGYSPNSLARNLRRNESKTIIAIVPDICDPYYTEIIRG
IEDAAMEHGYIVLLGDSAQQKKRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEVVNYLTQLGHKRIAQISGPQAAALCQFRQQGYMQALRRAGITMNPAYSIFGNFSFEDGAKAVRQLLTLPEPPTA
IFCHNDAMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLEILRGHDVSSGSRLLE
TSLVVRKSAAPPRAI

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=72994 Vt282_RS00895 WP_162047363.1 189354..190361(+) (cytR) [Vibrio taketomensis strain C4III282]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGGGTTTCAACAGCGACAGTATCAAGGGCGTTGATGAATCCTGAGAA
GGTTTCTTCGGCGACGCGCAAGCGTGTTGAAGATGCAGTTTTAGAAGCTGGTTACTCACCAAACTCACTTGCGCGCAACT
TGCGTCGTAATGAGTCGAAAACCATTATCGCAATCGTTCCAGATATCTGTGATCCGTACTACACCGAGATCATTCGTGGT
ATCGAAGATGCTGCAATGGAACACGGATACATTGTATTACTTGGTGACAGCGCACAACAAAAGAAGCGCGAGAACTCTTT
TGTTAATTTAGTTTTTACTAAGCAAGCCGATGGTATGTTGCTGTTGGGTACCGATTTACCTTTCGATGTGAGTAAGCCTG
AGCAAAAAAATTTACCGCCGATGGTCATGGCGTGTGAATTTGCTCCGGAGCTTGAATTGCCAACGGTGCATATTGATAAC
TTAACTTCTGCATTTGAAGTGGTTAACTATTTAACTCAGCTTGGCCACAAGCGTATTGCGCAAATATCGGGCCCACAAGC
AGCCGCATTATGTCAGTTCCGTCAACAAGGTTACATGCAAGCTCTGCGTCGTGCAGGCATCACCATGAATCCGGCATACA
GTATTTTCGGTAATTTCTCTTTTGAAGATGGCGCCAAAGCTGTACGTCAATTGTTGACCTTACCAGAGCCGCCAACGGCT
ATTTTCTGTCACAACGATGCGATGGCAATTGGTGCGATTCAAGAAGCAAAACGTTTAGGTTTACGGGTGCCACAAGATCT
CTCTGTGGTGGGATTTGATGATATTCAGTTTGCACAGTATTGCGATCCTCCGTTAACCACCATTTCTCAGCCAAGATATG
AAATTGGCCGTCAGGCTATGTTAATGATGTTGGAGATATTGCGTGGCCATGATGTAAGCTCGGGCTCGAGATTATTAGAA
ACCAGCTTAGTCGTGCGTAAGAGTGCAGCTCCTCCACGAGCAATTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

92.169

99.104

0.913
  cytR Vibrio parahaemolyticus RIMD 2210633

89.79

99.403

0.893

Multiple sequence alignment