Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   N4G50_RS14795 Genome accession   NZ_CP104479
Coordinates   2962512..2963117 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica strain SalSpp_sample_09_No.5     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2957512..2968117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4G50_RS14780 (N4G50_14780) helD 2957729..2959783 (-) 2055 WP_024157337.1 DNA helicase IV -
  N4G50_RS14785 (N4G50_14785) - 2959907..2960353 (+) 447 WP_001261222.1 YccF domain-containing protein -
  N4G50_RS14790 (N4G50_14790) yccS 2960372..2962525 (+) 2154 WP_000950876.1 YccS family putative transporter -
  N4G50_RS14795 (N4G50_14795) sxy/tfoX 2962512..2963117 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  N4G50_RS14800 (N4G50_14800) sulA 2963334..2963843 (+) 510 WP_023203509.1 SOS-induced cell division inhibitor SulA -
  N4G50_RS14805 (N4G50_14805) ompA 2964200..2965252 (+) 1053 WP_001670727.1 porin OmpA -
  N4G50_RS14810 (N4G50_14810) matP 2965324..2965776 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  N4G50_RS14815 (N4G50_14815) - 2965962..2967722 (+) 1761 WP_000156448.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=729918 N4G50_RS14795 WP_001202375.1 2962512..2963117(-) (sxy/tfoX) [Salmonella enterica strain SalSpp_sample_09_No.5]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=729918 N4G50_RS14795 WP_001202375.1 2962512..2963117(-) (sxy/tfoX) [Salmonella enterica strain SalSpp_sample_09_No.5]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751