Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   LDO00_RS14215 Genome accession   NZ_AP024521
Coordinates   2938316..2938831 (-) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli strain E189     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2933316..2943831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO00_RS14190 (NIAHE189_27280) ygaZ 2933715..2934452 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  LDO00_RS14195 (NIAHE189_27290) ygaH 2934442..2934777 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  LDO00_RS14200 (NIAHE189_27300) emrR 2934868..2935398 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  LDO00_RS14205 (NIAHE189_27310) emrA 2935525..2936697 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  LDO00_RS14210 (NIAHE189_27320) emrB 2936714..2938252 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  LDO00_RS14215 (NIAHE189_27330) luxS 2938316..2938831 (-) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  LDO00_RS14220 (NIAHE189_27340) gshA 2938981..2940537 (-) 1557 WP_023155426.1 glutamate--cysteine ligase -
  LDO00_RS14225 (NIAHE189_27350) yqaA 2940610..2941038 (-) 429 WP_001287454.1 YqaA family protein -
  LDO00_RS14230 (NIAHE189_27360) yqaB 2941035..2941601 (-) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  LDO00_RS14260 (NIAHE189_27370) csrA 2943196..2943381 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=72991 LDO00_RS14215 WP_001130210.1 2938316..2938831(-) (luxS) [Escherichia coli strain E189]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=72991 LDO00_RS14215 WP_001130210.1 2938316..2938831(-) (luxS) [Escherichia coli strain E189]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737