Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NYP10_RS08880 Genome accession   NZ_CP104471
Coordinates   1626682..1627308 (+) Length   208 a.a.
NCBI ID   WP_023315767.1    Uniprot ID   A0A837FJ36
Organism   Enterobacter hormaechei strain 80014967     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1621682..1632308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYP10_RS08860 (NYP10_08865) - 1622081..1623841 (-) 1761 WP_032608967.1 Lon protease family protein -
  NYP10_RS08865 (NYP10_08870) matP 1624028..1624480 (+) 453 WP_003858158.1 macrodomain Ter protein MatP -
  NYP10_RS08870 (NYP10_08875) ompA 1624546..1625598 (-) 1053 WP_003858156.1 porin OmpA -
  NYP10_RS08875 (NYP10_08880) sulA 1625955..1626464 (-) 510 WP_032610196.1 SOS-induced cell division inhibitor SulA -
  NYP10_RS08880 (NYP10_08885) sxy/tfoX 1626682..1627308 (+) 627 WP_023315767.1 TfoX/Sxy family DNA transformation protein Regulator
  NYP10_RS08885 (NYP10_08890) yccS 1627265..1629427 (-) 2163 WP_022650744.1 YccS family putative transporter -
  NYP10_RS08890 (NYP10_08895) - 1629446..1629892 (-) 447 WP_003858149.1 YccF domain-containing protein -
  NYP10_RS08895 (NYP10_08900) helD 1630015..1632069 (+) 2055 WP_047054452.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24002.57 Da        Isoelectric Point: 9.4592

>NTDB_id=729783 NYP10_RS08880 WP_023315767.1 1626682..1627308(+) (sxy/tfoX) [Enterobacter hormaechei strain 80014967]
MKKISYERIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELTEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=729783 NYP10_RS08880 WP_023315767.1 1626682..1627308(+) (sxy/tfoX) [Enterobacter hormaechei strain 80014967]
ATGAAAAAGATATCTTATGAGCGGATTTATCAATCTCAAGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCTTCCTCTTTTCTGACCCTGATGAAACGAGGACGCCCAGTGCTGCTTAAT
TACTACCGTGTGGACGAAGGTCTGTGGCAAAACAGGGAAAAACTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAAGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCGAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCGATTGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTACGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A837FJ36

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572