Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   N1H43_RS08135 Genome accession   NZ_CP104442
Coordinates   1710490..1711119 (+) Length   209 a.a.
NCBI ID   WP_000793791.1    Uniprot ID   -
Organism   Escherichia coli strain HBUT-L     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1705490..1716119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N1H43_RS08115 (N1H43_08120) ycbZ 1705891..1707651 (-) 1761 WP_000156524.1 Lon protease family protein -
  N1H43_RS08120 (N1H43_08125) matP 1707837..1708289 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  N1H43_RS08125 (N1H43_08130) ompA 1708365..1709405 (-) 1041 WP_000750416.1 porin OmpA -
  N1H43_RS08130 (N1H43_08135) sulA 1709762..1710271 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  N1H43_RS08135 (N1H43_08140) sxy/tfoX 1710490..1711119 (+) 630 WP_000793791.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  N1H43_RS08140 (N1H43_08145) yccS 1711082..1713244 (-) 2163 WP_000875023.1 YccS family putative transporter -
  N1H43_RS08145 (N1H43_08150) yccF 1713254..1713700 (-) 447 WP_001261235.1 YccF domain-containing protein -
  N1H43_RS08150 (N1H43_08155) helD 1713823..1715877 (+) 2055 WP_260579136.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24120.99 Da        Isoelectric Point: 8.8133

>NTDB_id=729710 N1H43_RS08135 WP_000793791.1 1710490..1711119(+) (sxy/tfoX) [Escherichia coli strain HBUT-L]
MKNLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVCLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=729710 N1H43_RS08135 WP_000793791.1 1710490..1711119(+) (sxy/tfoX) [Escherichia coli strain HBUT-L]
ATGAAAAACCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGTGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99