Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   N4P55_RS24560 Genome accession   NZ_CP104408
Coordinates   5381298..5382665 (-) Length   455 a.a.
NCBI ID   WP_053258110.1    Uniprot ID   A0A1E4XKW2
Organism   Pseudomonas fluorescens strain Ant01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5376298..5387665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4P55_RS24535 (N4P55_24550) yjiA 5376554..5377513 (-) 960 WP_262666308.1 GTPase -
  N4P55_RS24540 (N4P55_24555) - 5377700..5377897 (-) 198 WP_003176208.1 YbdD/YjiX family protein -
  N4P55_RS24545 (N4P55_24560) - 5377913..5379979 (-) 2067 WP_064454217.1 carbon starvation CstA family protein -
  N4P55_RS24550 (N4P55_24565) - 5380164..5380532 (+) 369 WP_262666309.1 PilZ domain-containing protein -
  N4P55_RS24555 (N4P55_24570) - 5380537..5381271 (-) 735 WP_262668052.1 hypothetical protein -
  N4P55_RS24560 (N4P55_24575) radA 5381298..5382665 (-) 1368 WP_053258110.1 DNA repair protein RadA Machinery gene
  N4P55_RS24565 (N4P55_24580) - 5382701..5383240 (-) 540 WP_221295678.1 ankyrin repeat domain-containing protein -
  N4P55_RS24570 (N4P55_24585) katB 5383298..5384839 (-) 1542 WP_221295679.1 catalase KatB -
  N4P55_RS24575 (N4P55_24590) mscL 5385126..5385542 (+) 417 WP_064454222.1 large-conductance mechanosensitive channel protein MscL -
  N4P55_RS24580 (N4P55_24595) - 5385585..5386361 (-) 777 WP_262666310.1 ferredoxin--NADP reductase -
  N4P55_RS24585 (N4P55_24600) - 5386820..5387530 (+) 711 WP_262666311.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48759.23 Da        Isoelectric Point: 6.8987

>NTDB_id=729680 N4P55_RS24560 WP_053258110.1 5381298..5382665(-) (radA) [Pseudomonas fluorescens strain Ant01]
MAKAKRMYGCTECGATFPKWAGQCSECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=729680 N4P55_RS24560 WP_053258110.1 5381298..5382665(-) (radA) [Pseudomonas fluorescens strain Ant01]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACGGAGTGCGGCGCGACCTTTCCCAAGTGGGCCGGCCAATGCTCCGAGTG
TGGCGCGTGGAACACCCTGACTGAAACCATGATCGAAAGCGGCGGCGCTGCGGCCCCTACCGGCCGTGCCGGCTGGACCG
GGCAGCAGGCGCAGATCAAGACCTTGGCCGAAGTCAGTGTTGAAGAGATCCCGCGTTTCTCCACGGCTTCCGGTGAGCTG
GACCGCGTGCTCGGCGGTGGCCTGGTGGACGGTTCGGTGGTGCTGATCGGTGGCGACCCCGGCATCGGTAAATCAACCAT
CCTGTTGCAAACCCTGTGCAGCATCGCCAGTCGCATGCCGGCGCTGTATGTCACCGGCGAAGAATCCCAGCAGCAAGTGG
CCATGCGCGCCCGTCGCCTGGGCCTGCCCCAGGATCAACTGCGGGTAATGACCGAAACCTGCATCGAAAGCATCATCGCC
ACGGCCCGCATCGAAAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACGATTTTCACCGAGCAGTTGCAGTCGGCACC
GGGCGGCGTATCCCAGGTGCGTGAAAGCGCGGCGCTGCTGGTGCGGTATGCCAAGCAAAGCGGCACGGCGATCTTCCTGG
TCGGCCATGTGACTAAAGAAGGCGCGCTGGCCGGGCCACGGGTGCTTGAGCATATGGTCGACACTGTGCTGTATTTCGAA
GGCGAATCCGATGGCCGCTTACGATTGCTGCGGGCGGTGAAGAACCGCTTTGGCGCAGTCAATGAGTTGGGCGTGTTCGC
CATGACCGACCGAGGATTGAAAGAAGTCTCTAACCCGTCGGCCATTTTTCTCACACGTGCCCAGGAAGAAGTTCCGGGAA
GTGTGGTGATGGCGACGTGGGAAGGCACTCGGCCAATGCTGGTGGAAGTGCAGGCGCTGGTGGATGACAGCCACTTGGCC
AACCCGCGCCGGGTCACGCTGGGTCTGGATCAGAACCGCCTGGCGATGTTGCTCGCCGTGCTACACCGTCACGGCGGCAT
TCCCACCCATGACCAGGACGTATTCCTCAACGTGGTTGGCGGGGTCAAGGTGCTGGAAACCGCCTCCGACCTGGCCTTGA
TGGCGGCAGTGATGTCCAGCCTGCGCAATCGGCCGCTGCCCCATGACTTGTTGGTGTTCGGTGAAGTCGGCCTGTCGGGC
GAGGTGCGCCCGGTGCCGAGTGGCCAGGAACGCTTGAAAGAAGCGGCCAAGCACGGTTTCAAGCGCGCAATTGTGCCCAA
GGGCAATGCGCCGAAAGAATCGCCGCCGGGCTTGCAGGTTATTGCGGTCACGCGCCTGGAGCAGGCGTTGGATGCACTTT
TCGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E4XKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.453

100

0.497
  radA Streptococcus mitis SK321

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.711

100

0.468
  radA Streptococcus pneumoniae Rx1

46.711

100

0.468
  radA Streptococcus pneumoniae D39

46.711

100

0.468
  radA Streptococcus pneumoniae R6

46.711

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.711

100

0.468