Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   N5F15_RS08330 Genome accession   NZ_CP104401
Coordinates   1747857..1748483 (+) Length   208 a.a.
NCBI ID   WP_017384804.1    Uniprot ID   A0AA37AJW2
Organism   Enterobacter hormaechei subsp. steigerwaltii strain colR     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1742857..1753483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5F15_RS08310 (N5F15_08310) - 1743256..1745016 (-) 1761 WP_033487273.1 AAA family ATPase -
  N5F15_RS08315 (N5F15_08315) matP 1745203..1745655 (+) 453 WP_006809347.1 macrodomain Ter protein MatP -
  N5F15_RS08320 (N5F15_08320) ompA 1745721..1746773 (-) 1053 WP_017694761.1 porin OmpA -
  N5F15_RS08325 (N5F15_08325) sulA 1747130..1747639 (-) 510 WP_032104231.1 SOS-induced cell division inhibitor SulA -
  N5F15_RS08330 (N5F15_08330) sxy/tfoX 1747857..1748483 (+) 627 WP_017384804.1 TfoX/Sxy family DNA transformation protein Regulator
  N5F15_RS08335 (N5F15_08335) yccS 1748440..1750602 (-) 2163 WP_133982570.1 YccS family putative transporter -
  N5F15_RS08340 (N5F15_08340) - 1750621..1751067 (-) 447 WP_003858149.1 YccF domain-containing protein -
  N5F15_RS08345 (N5F15_08345) helD 1751190..1753244 (+) 2055 WP_133982572.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24018.63 Da        Isoelectric Point: 9.4592

>NTDB_id=729603 N5F15_RS08330 WP_017384804.1 1747857..1748483(+) (sxy/tfoX) [Enterobacter hormaechei subsp. steigerwaltii strain colR]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELMEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=729603 N5F15_RS08330 WP_017384804.1 1747857..1748483(+) (sxy/tfoX) [Enterobacter hormaechei subsp. steigerwaltii strain colR]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAGGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTGACCCTGATGAAACGAGGACGGCCAGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAGCTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAACGCCATCAGCGTAACCGGCTTAAGGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCCATCGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTATGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572