Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   N4599_RS04420 Genome accession   NZ_CP104398
Coordinates   850513..851889 (-) Length   458 a.a.
NCBI ID   WP_062812459.1    Uniprot ID   -
Organism   Limosilactobacillus oris strain AM_LB10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 845513..856889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4599_RS04400 (N4599_04400) cysS 845805..847220 (-) 1416 WP_260902231.1 cysteine--tRNA ligase -
  N4599_RS04405 (N4599_04405) - 847618..848481 (-) 864 WP_260902233.1 IS3 family transposase -
  N4599_RS04410 (N4599_04410) - 848499..849194 (-) 696 WP_062812850.1 helix-turn-helix domain-containing protein -
  N4599_RS04415 (N4599_04415) - 849353..850486 (-) 1134 WP_260902235.1 PIN/TRAM domain-containing protein -
  N4599_RS04420 (N4599_04420) radA 850513..851889 (-) 1377 WP_062812459.1 DNA repair protein RadA Machinery gene
  N4599_RS04425 (N4599_04425) - 851903..852439 (-) 537 WP_039930098.1 dUTP diphosphatase -
  N4599_RS04430 (N4599_04430) - 852568..852864 (+) 297 WP_260902240.1 GNAT family N-acetyltransferase -
  N4599_RS04435 (N4599_04435) rpiA 852875..853558 (+) 684 WP_260902242.1 ribose-5-phosphate isomerase RpiA -
  N4599_RS04440 (N4599_04440) - 853811..855151 (+) 1341 WP_260902245.1 aminopeptidase C -
  N4599_RS04445 (N4599_04445) - 855221..856087 (-) 867 WP_260902247.1 alpha/beta hydrolase -
  N4599_RS04450 (N4599_04450) - 856089..856772 (-) 684 WP_260902476.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49978.20 Da        Isoelectric Point: 8.7016

>NTDB_id=729569 N4599_RS04420 WP_062812459.1 850513..851889(-) (radA) [Limosilactobacillus oris strain AM_LB10]
MAKVRTQYVCQNCGYSSRRYLGRCPNCGEWNSLVEEQVQSESKAAATRATTTLTGLVAKPQKISEINSKETPRVKTKLNE
LNRVLGGGIVPGSLILIGGDPGIGKSTLLLQVSGQLSDEHHRVLYVSGEESGTQIKMRAERLGVSGDEFYVYPETNMDSI
KETIRDLKPEYVVIDSVQTMQATDVSSAIGSVSQIREVTAQLMQIAKSNNITVFVVGHVTKGGALAGPKILEHMVDTVLY
FEGDLHHTYRILRSVKNRFGSTNELGIFEMHTNGLSEVKNPSEIFLEERLRDATGSSVVVSLEGTRPILVEIQALVTPTV
YGNAQRTATGLSRNRVSLIMAVLEKRANLMLQNQDAYLKAAGGVKLDEPAIDLAIAVSIASSYRDKGTRPADAFVGEVGL
TGEIRRVNRIEQRVAEAQKLGFERIFIPKNNLKGWTPPTGIEVVGVTTLREALRLALG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=729569 N4599_RS04420 WP_062812459.1 850513..851889(-) (radA) [Limosilactobacillus oris strain AM_LB10]
ATGGCAAAGGTACGGACACAGTACGTGTGTCAAAATTGCGGTTATAGCTCCCGCCGTTACCTTGGTCGGTGCCCCAACTG
CGGGGAATGGAACTCGTTGGTAGAAGAACAAGTTCAATCAGAAAGCAAGGCCGCGGCGACGCGGGCAACGACGACCCTGA
CCGGGTTGGTTGCTAAGCCGCAAAAAATTAGTGAAATTAATAGTAAGGAAACGCCCCGGGTCAAGACCAAGCTCAATGAG
CTGAACCGGGTTCTCGGTGGTGGGATCGTTCCTGGCTCCCTAATCCTGATTGGTGGGGATCCCGGTATCGGGAAATCAAC
CCTCCTTCTTCAGGTTTCCGGCCAGCTCAGTGACGAACACCACCGGGTCCTGTATGTTTCAGGAGAGGAAAGCGGCACCC
AGATTAAGATGCGGGCAGAACGCCTCGGCGTGTCCGGGGATGAATTTTATGTTTACCCGGAAACCAATATGGATAGTATT
AAGGAAACGATCCGTGACCTCAAGCCCGAATACGTAGTGATTGACTCTGTCCAAACAATGCAGGCAACGGACGTCAGTTC
AGCAATCGGTAGTGTTTCTCAAATTCGGGAAGTTACTGCCCAGTTGATGCAAATTGCCAAGAGCAATAACATTACGGTTT
TCGTCGTGGGCCACGTGACCAAAGGCGGTGCCCTAGCCGGGCCGAAGATTCTGGAGCACATGGTGGACACAGTGCTCTAC
TTTGAAGGGGACCTCCACCATACTTACCGGATCCTCCGCTCGGTCAAGAACCGTTTTGGCTCGACCAATGAACTGGGGAT
TTTTGAAATGCACACCAACGGCCTCAGTGAGGTCAAGAACCCCTCAGAGATTTTTCTTGAGGAACGACTTCGTGATGCCA
CCGGTTCTTCCGTAGTGGTTTCCCTGGAGGGGACGCGGCCCATTCTGGTAGAAATTCAAGCCCTGGTGACTCCCACGGTC
TACGGGAATGCGCAGCGAACTGCTACCGGTTTAAGTCGAAACAGAGTATCATTGATAATGGCCGTCTTGGAAAAGCGAGC
CAACCTGATGCTGCAAAATCAGGATGCCTACCTCAAAGCAGCGGGCGGTGTCAAGCTGGATGAACCGGCAATCGACCTGG
CAATCGCGGTCAGCATTGCTTCCAGCTACCGGGATAAGGGGACACGTCCCGCCGACGCCTTCGTTGGCGAAGTCGGTTTG
ACCGGTGAAATTCGCCGGGTGAACCGGATTGAACAGCGGGTCGCTGAGGCGCAGAAGCTCGGCTTTGAACGAATCTTCAT
CCCCAAGAACAACTTAAAGGGGTGGACACCACCAACCGGGATTGAGGTCGTCGGGGTTACGACTTTACGTGAAGCACTCC
GGCTGGCCCTCGGCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(65-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

67.181

99.127

0.666
  radA Streptococcus mitis NCTC 12261

67.181

99.127

0.666
  radA Streptococcus pneumoniae Rx1

66.96

99.127

0.664
  radA Streptococcus pneumoniae D39

66.96

99.127

0.664
  radA Streptococcus pneumoniae R6

66.96

99.127

0.664
  radA Streptococcus pneumoniae TIGR4

66.96

99.127

0.664
  radA Bacillus subtilis subsp. subtilis str. 168

63.478

100

0.638