Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   FOY96_RS02135 Genome accession   NZ_AP019632
Coordinates   463413..464846 (-) Length   477 a.a.
NCBI ID   WP_047060252.1    Uniprot ID   -
Organism   Enterobacter asburiae strain 1808-013     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 458413..469846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOY96_RS02105 (EAS1808013_004020) elbB 459945..460598 (+) 654 WP_143347746.1 isoprenoid biosynthesis glyoxalase ElbB -
  FOY96_RS02110 (EAS1808013_004030) mtgA 460595..461320 (+) 726 WP_143346431.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  FOY96_RS02115 (EAS1808013_004040) npr 461360..461632 (-) 273 WP_003861872.1 PTS phosphocarrier protein NPr -
  FOY96_RS02120 (EAS1808013_004050) rapZ 461629..462483 (-) 855 WP_014885397.1 RNase adapter RapZ -
  FOY96_RS02125 (EAS1808013_004060) ptsN 462529..463020 (-) 492 WP_008501443.1 PTS IIA-like nitrogen regulatory protein PtsN -
  FOY96_RS02130 (EAS1808013_004070) hpf 463103..463390 (-) 288 WP_008501444.1 ribosome hibernation promoting factor -
  FOY96_RS02135 (EAS1808013_004080) rpoN/rpoN1 463413..464846 (-) 1434 WP_047060252.1 RNA polymerase factor sigma-54 Machinery gene
  FOY96_RS02140 (EAS1808013_004090) lptB 464894..465619 (-) 726 WP_033146751.1 LPS export ABC transporter ATP-binding protein -
  FOY96_RS02145 (EAS1808013_004100) lptA 465626..466180 (-) 555 WP_033146750.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  FOY96_RS02150 (EAS1808013_004110) lptC 466149..466724 (-) 576 WP_033146749.1 LPS export ABC transporter periplasmic protein LptC -
  FOY96_RS02155 (EAS1808013_004120) kdsC 466721..467287 (-) 567 WP_023309356.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  FOY96_RS02160 (EAS1808013_004130) kdsD 467302..468288 (-) 987 WP_023333606.1 arabinose-5-phosphate isomerase KdsD -
  FOY96_RS02165 (EAS1808013_004140) - 468302..469279 (-) 978 WP_094934467.1 calcium/sodium antiporter -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54197.95 Da        Isoelectric Point: 4.3173

>NTDB_id=72951 FOY96_RS02135 WP_047060252.1 463413..464846(-) (rpoN/rpoN1) [Enterobacter asburiae strain 1808-013]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEVDTQQSQDTEALDTADALEQKEMPD
ELPLDASWDEIYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLDD
ILESMGDEEIELEEIEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFSKETPWLDEARLIISDHLDLLANHDFRSLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNDRWVVELNSDSIPRLQINQQYASMCTSARNDSDNQYIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=72951 FOY96_RS02135 WP_047060252.1 463413..464846(-) (rpoN/rpoN1) [Enterobacter asburiae strain 1808-013]
ATGAAGCAAGGTTTGCAATTAAGGCTCAGCCAACAACTGGCAATGACGCCGCAGCTACAGCAGGCAATTCGCCTGTTGCA
ACTGTCCACGTTAGAACTTCAGCAGGAGCTCCAGCAGGCGCTGGACAGCAACCCCCTGCTGGAACAAACCGATCTTCATG
ACGAGGTAGATACTCAGCAGTCACAGGATACAGAAGCGCTCGACACCGCGGATGCACTCGAACAAAAAGAGATGCCCGAC
GAGCTACCGCTGGATGCCAGCTGGGATGAAATCTACACCGCCGGAACCCCTTCCGGTACGCGTGCAGACTACCAGGATGA
TGAGCTACCGGTCTATCAGGGAGAAACCACCCAGTCGCTGCAGGATTACCTGATGTGGCAGGTGGAACTTACCCCCTTCT
CCGATACCGACCGCGCGATTGCCACCTCAATTGTCGATGCCGTTGACGACACCGGCTATTTGACCGTCACGCTGGACGAT
ATCCTGGAAAGCATGGGCGACGAAGAGATTGAACTTGAGGAGATCGAAGCCGTTCTGAAGCGCATCCAGCGTTTCGATCC
GGTAGGCGTGGCCGCAAAAGATCTGCGCGACTGCCTGCTGATCCAGCTTTCTCAGTTCAGCAAAGAGACGCCATGGCTCG
ACGAGGCGCGCTTAATCATCAGCGATCATCTGGATCTGTTGGCCAACCACGATTTCCGCAGCCTGATGCGCGTCACGCGC
CTGAAGGAAGAGGTGCTGAAAGAAGCGGTGAATCTGATCCAGTCGCTCGATCCGCGCCCGGGACAGTCGATCCAGACCAG
CGAACCCGAGTACGTTATCCCGGACGTGCTGGTCAGAAAACACAATGACCGCTGGGTCGTTGAACTTAATTCAGACAGTA
TCCCTCGCCTGCAAATCAACCAGCAGTATGCCTCCATGTGCACCAGCGCGCGTAACGACTCGGACAATCAATATATTCGT
AGCAATCTTCAGGAAGCGCGATGGCTGATCAAAAGTCTGGAGAGCCGAAATGATACGCTGCTGCGCGTCAGCCGCTGTAT
TGTCGAACAGCAGCAGGCGTTCTTTGAGCAGGGCGAAGAGTATATGAAACCGATGGTACTGGCGGATATCGCCCAGGCCG
TCGAGATGCATGAATCAACCATTTCCCGTGTCACCACGCAGAAGTATCTGCACAGTCCACGCGGTATATTTGAGCTTAAG
TATTTCTTCTCCAGCCATGTGAATACCGAGGGCGGCGGCGAAGCGTCGTCAACGGCCATTCGTGCCCTGGTGAAGAAGTT
GATCGCCGCGGAGAACCCCGCGAAGCCACTAAGCGACAGTAAGTTAACCACCATGCTGTCCGATCAGGGTATTATGGTGG
CACGTCGTACTGTTGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCCAACCAGCGTAAACAGCTGGTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.545

100

0.482

Multiple sequence alignment