Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   N4S13_RS15215 Genome accession   NZ_CP104392
Coordinates   3020531..3022285 (-) Length   584 a.a.
NCBI ID   WP_070723520.1    Uniprot ID   -
Organism   Enterococcus raffinosus strain HG-5     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3015531..3027285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4S13_RS15210 (N4S13_15210) rcrQ 3018754..3020538 (-) 1785 WP_028020633.1 ABC transporter ATP-binding protein Regulator
  N4S13_RS15215 (N4S13_15215) rcrP 3020531..3022285 (-) 1755 WP_070723520.1 ABC transporter ATP-binding protein Regulator
  N4S13_RS15220 (N4S13_15220) - 3022387..3022815 (-) 429 WP_028020634.1 MarR family winged helix-turn-helix transcriptional regulator -
  N4S13_RS15225 (N4S13_15225) - 3022875..3023210 (-) 336 WP_010745126.1 hypothetical protein -
  N4S13_RS15230 (N4S13_15230) - 3023355..3024734 (-) 1380 WP_010745125.1 MATE family efflux transporter -
  N4S13_RS15235 (N4S13_15235) - 3024738..3025172 (-) 435 WP_010745124.1 MarR family winged helix-turn-helix transcriptional regulator -
  N4S13_RS15240 (N4S13_15240) - 3025306..3025905 (-) 600 WP_010745123.1 YitT family protein -

Sequence

Protein


Download         Length: 584 a.a.        Molecular weight: 64673.74 Da        Isoelectric Point: 5.2482

>NTDB_id=729504 N4S13_RS15215 WP_070723520.1 3020531..3022285(-) (rcrP) [Enterococcus raffinosus strain HG-5]
MIQLIKRTNAKERLLVLASVLFIVGQVWMDLKVPDYMSQITTLLQTPNTAISEILKPGGWMILLSLMSFVFSSIVGLFAA
SLTCRLRQEMFGQVMDYSTYEIQQFSIPSLTTRTTNDLTQIQQVVAMGLQVMIKGPITAVWAVLKIAGKNWQWTTTTGVA
VLILLIMLSIVLTLVQPRFAKVQQLTDKVNSITRENLTGLRVVRAYNAEDYQEEKFEKANQDLTATNLFAGRVMALLSPG
MSLISGGLTLAVYWIGAYMIQQAQGGLKLSLFSDMIVFSSYAMQVVMSFVLMSMIFMILPRATVSARRINEVLTKESSVE
FPTEGEKTQPEIKGTVEFDHVSFSYPDASEPVIHDISFKADQGDTVAFIGSTGSGKSTILNLIPRFYETTEGNISIDGQP
INTYSHVNLNDIVGYIPQKPILFSGTIQSNLDFGTSGNQPLNEEKMQEALSIAQASEFVNEKEGKLKSPVAQNGSNFSGG
QKQRLAIARVIARQPEILLFDDSFSALDYKTDKKLRQVLKEKLADTTKLIVAQRISTIMDADQILVLDEGRIVGQGTHDE
LLATNSVYQEIAYSQLSKEELVNG

Nucleotide


Download         Length: 1755 bp        

>NTDB_id=729504 N4S13_RS15215 WP_070723520.1 3020531..3022285(-) (rcrP) [Enterococcus raffinosus strain HG-5]
ATGATACAACTAATAAAACGAACCAACGCAAAAGAACGATTGCTGGTATTAGCCAGTGTACTATTTATCGTCGGACAAGT
CTGGATGGATTTGAAGGTCCCGGATTATATGTCGCAAATCACCACCTTATTGCAAACGCCTAACACCGCCATCAGTGAAA
TTTTGAAACCGGGCGGCTGGATGATTTTACTTTCTCTAATGAGCTTTGTTTTTTCTTCTATTGTCGGTTTATTCGCCGCG
AGCTTAACTTGCCGCCTACGTCAAGAGATGTTTGGACAAGTAATGGATTATTCCACGTATGAGATTCAGCAATTCTCGAT
CCCCAGTTTAACGACTCGGACAACCAATGATTTAACGCAAATTCAACAGGTAGTCGCGATGGGGCTGCAAGTAATGATCA
AAGGACCTATCACGGCGGTCTGGGCGGTATTGAAAATTGCCGGAAAAAATTGGCAGTGGACCACTACGACAGGAGTTGCT
GTTTTGATCCTATTGATTATGCTATCGATCGTTTTGACACTAGTGCAGCCGCGCTTTGCAAAAGTGCAGCAATTAACCGA
TAAAGTTAACAGTATTACACGGGAAAATCTAACGGGTCTGCGAGTGGTCCGAGCATATAACGCAGAAGACTATCAAGAAG
AGAAATTCGAGAAGGCCAATCAAGATCTCACAGCAACGAATTTATTCGCGGGTCGCGTAATGGCATTGCTGAGTCCGGGA
ATGAGCCTGATTTCAGGCGGACTGACACTAGCGGTCTATTGGATCGGTGCTTACATGATTCAACAAGCGCAAGGGGGACT
AAAGCTTTCCTTGTTCAGTGATATGATCGTCTTTTCTTCTTATGCGATGCAGGTAGTAATGAGCTTTGTTTTAATGTCGA
TGATTTTTATGATCTTACCTCGAGCGACCGTATCCGCTAGACGGATCAACGAAGTTTTAACGAAAGAATCCTCCGTTGAA
TTTCCAACGGAAGGCGAGAAAACACAACCGGAGATCAAAGGAACCGTAGAATTCGATCATGTATCATTCAGCTATCCGGA
TGCTTCTGAACCTGTGATTCATGACATCAGCTTTAAGGCCGATCAGGGGGATACAGTTGCCTTTATCGGTTCGACCGGCA
GCGGAAAAAGTACAATCCTGAATTTGATTCCTCGCTTTTATGAAACAACCGAAGGAAATATTTCAATTGATGGACAGCCG
ATCAATACGTATAGTCACGTGAATTTAAATGATATTGTCGGCTACATTCCCCAAAAGCCAATTTTATTTAGCGGAACGAT
CCAGTCGAATCTTGATTTTGGAACCAGCGGTAATCAGCCGCTGAATGAAGAAAAAATGCAGGAAGCCTTGTCCATTGCAC
AGGCTAGTGAATTTGTGAATGAAAAAGAGGGCAAGCTGAAGAGTCCGGTCGCTCAAAACGGCAGCAATTTCTCCGGTGGA
CAGAAGCAGCGTCTAGCAATTGCTCGTGTGATCGCAAGACAGCCAGAAATTCTATTATTCGATGATTCCTTTTCTGCGCT
AGATTACAAAACGGATAAAAAATTACGACAGGTACTAAAAGAAAAATTAGCTGATACGACAAAACTGATTGTTGCTCAAC
GAATCAGTACGATCATGGATGCGGATCAGATCCTTGTTTTGGATGAAGGACGAATCGTCGGACAAGGAACCCACGACGAA
TTATTGGCGACCAACTCCGTCTATCAAGAGATTGCGTATTCACAGCTGTCGAAGGAGGAATTAGTTAATGGATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(19-289)

ABC transporter (ABC_tran)

(354-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

60.167

100

0.618