Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   N4S13_RS15210 Genome accession   NZ_CP104392
Coordinates   3018754..3020538 (-) Length   594 a.a.
NCBI ID   WP_028020633.1    Uniprot ID   -
Organism   Enterococcus raffinosus strain HG-5     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3013754..3025538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4S13_RS15205 (N4S13_15205) - 3014222..3018094 (-) 3873 WP_167325161.1 VWA domain-containing protein -
  N4S13_RS15210 (N4S13_15210) rcrQ 3018754..3020538 (-) 1785 WP_028020633.1 ABC transporter ATP-binding protein Regulator
  N4S13_RS15215 (N4S13_15215) rcrP 3020531..3022285 (-) 1755 WP_070723520.1 ABC transporter ATP-binding protein Regulator
  N4S13_RS15220 (N4S13_15220) - 3022387..3022815 (-) 429 WP_028020634.1 MarR family winged helix-turn-helix transcriptional regulator -
  N4S13_RS15225 (N4S13_15225) - 3022875..3023210 (-) 336 WP_010745126.1 hypothetical protein -
  N4S13_RS15230 (N4S13_15230) - 3023355..3024734 (-) 1380 WP_010745125.1 MATE family efflux transporter -
  N4S13_RS15235 (N4S13_15235) - 3024738..3025172 (-) 435 WP_010745124.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 594 a.a.        Molecular weight: 66342.26 Da        Isoelectric Point: 5.1424

>NTDB_id=729503 N4S13_RS15210 WP_028020633.1 3018754..3020538(-) (rcrQ) [Enterococcus raffinosus strain HG-5]
MDNTLENIQTQPKAHPLRKNILNALNQYKWPLILAIIFATIGSITQIVGPNRLSEITDLITQGLRGSINLTQISHIGLSL
VLLYVIGAVLSYFQGFIVATVTQRFSKQMRRQISEKINAVPLNYFDSHSQGDTLSRVTNDLDTVSQSLNQSLSSLFPSIT
LFIGCLIMMFRTNLILTITSVISVLLGFLFMAVIMAKSQVHFNQQQEKLANISGFAEEAYSGQQVINAYSAAEDMKTEFG
EMNQDFYGSVWKAQFLSGIMQPLMGFIGNFGYVAVCVVGAVLALRGDITLGVIVAFTVYIRLFSQPLSQLAQAFSNLQSA
AAAMNRVFEFLAEEELADESEKITKLRKPEGNIRFENVSFGYEKERTIIHHFSVEAKAGQKIAIVGPTGAGKTTIVNLLM
RFYETNHGEIIIDGVSTKDMTREEVHDQFCMVLQDTWLFEGTIKENLIYNQQHVTDEAVVKACKAVGIDHFIRTLPKGYD
TYLDDSVSLSVGQKQLLTIARAIIKDAPMLILDEATSSVDTRTEELIQAAMDQLMNNRTSFVIAHRLSTIRNADLILVMK
EGNIIEQGNHEELMDEQGFYADLYNSQFEKEQLV

Nucleotide


Download         Length: 1785 bp        

>NTDB_id=729503 N4S13_RS15210 WP_028020633.1 3018754..3020538(-) (rcrQ) [Enterococcus raffinosus strain HG-5]
ATGGATAATACATTGGAAAATATTCAAACACAACCAAAGGCACATCCTTTGCGCAAAAATATTTTAAACGCGTTGAATCA
ATACAAATGGCCGCTGATTTTAGCGATCATCTTTGCAACGATCGGGAGTATCACACAAATCGTCGGACCGAATCGATTAA
GTGAAATTACAGATTTGATTACTCAAGGCCTGCGAGGATCGATCAATCTCACACAAATCAGCCACATTGGCTTAAGTTTA
GTTCTATTATATGTAATCGGTGCGGTTCTCTCTTATTTTCAAGGCTTCATCGTAGCGACAGTAACACAACGCTTTTCAAA
ACAAATGCGTCGTCAGATATCGGAAAAGATTAATGCTGTGCCGTTGAATTATTTTGATTCTCACAGTCAGGGGGATACCT
TGAGTCGTGTGACCAATGACCTAGATACAGTGAGCCAATCCTTGAATCAAAGCTTGAGCTCCTTGTTTCCATCAATCACG
CTTTTTATCGGTTGTCTGATCATGATGTTTCGAACAAATCTTATATTAACAATCACCTCAGTCATTTCTGTTCTATTAGG
CTTTTTATTCATGGCGGTCATTATGGCTAAATCCCAAGTCCATTTTAATCAGCAACAGGAAAAGCTTGCGAATATCAGCG
GCTTTGCTGAAGAGGCGTATTCTGGACAACAGGTCATTAATGCATACAGTGCCGCAGAGGATATGAAGACTGAGTTTGGT
GAGATGAATCAGGATTTTTATGGCAGTGTGTGGAAGGCACAATTCTTATCTGGGATCATGCAGCCGTTAATGGGCTTTAT
CGGAAATTTTGGGTATGTTGCAGTCTGCGTAGTTGGCGCTGTTTTAGCTCTGAGAGGCGACATCACTCTTGGAGTGATCG
TCGCGTTTACTGTCTATATCCGCTTGTTTTCACAGCCGCTATCACAGTTGGCGCAAGCTTTTTCGAATCTGCAGTCGGCG
GCAGCGGCAATGAATCGTGTGTTTGAATTTTTAGCCGAAGAGGAATTGGCTGATGAATCAGAAAAAATAACCAAATTACG
GAAGCCGGAAGGCAATATTCGCTTCGAGAATGTCAGCTTTGGCTATGAAAAAGAACGAACGATCATTCATCATTTCAGTG
TCGAAGCGAAGGCGGGTCAAAAAATCGCGATTGTTGGTCCAACTGGAGCAGGGAAGACAACGATCGTTAATCTGCTGATG
CGCTTTTACGAAACCAATCATGGAGAGATTATAATTGATGGTGTGTCCACAAAGGATATGACGCGAGAAGAGGTCCACGA
CCAATTTTGTATGGTATTGCAGGATACTTGGCTATTTGAAGGAACGATCAAAGAAAATCTGATTTACAATCAGCAGCATG
TTACCGACGAAGCGGTGGTAAAGGCGTGTAAAGCAGTAGGGATTGATCACTTTATCCGAACACTGCCGAAGGGCTATGAT
ACTTATCTAGATGATAGTGTGAGCTTATCTGTTGGACAAAAACAATTATTGACGATTGCTCGTGCGATCATAAAAGACGC
ACCGATGCTGATTCTAGATGAGGCCACTAGTTCTGTGGATACCCGAACAGAGGAGTTGATTCAAGCAGCGATGGATCAAT
TAATGAATAATCGAACTTCCTTCGTCATCGCTCATCGACTATCCACCATTCGAAATGCGGATCTGATTTTAGTCATGAAA
GAAGGAAACATTATCGAGCAAGGGAACCATGAAGAGCTGATGGATGAACAAGGCTTTTACGCTGACCTATACAATAGTCA
GTTTGAGAAAGAACAGCTTGTTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(370-517)

ABC transporter transmembrane region (ABC_membrane)

(32-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

63.511

97.811

0.621