Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   N4S13_RS11195 Genome accession   NZ_CP104392
Coordinates   2207135..2208805 (-) Length   556 a.a.
NCBI ID   WP_028020322.1    Uniprot ID   A0AAW8T1E2
Organism   Enterococcus raffinosus strain HG-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2202135..2213805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4S13_RS11165 (N4S13_11165) - 2202251..2204440 (-) 2190 WP_028020317.1 penicillin-binding transpeptidase domain-containing protein -
  N4S13_RS11170 (N4S13_11170) ftsL 2204441..2204818 (-) 378 WP_028020318.1 cell division protein FtsL -
  N4S13_RS11175 (N4S13_11175) rsmH 2204824..2205777 (-) 954 WP_028020319.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  N4S13_RS11180 (N4S13_11180) mraZ 2205793..2206224 (-) 432 WP_028020320.1 division/cell wall cluster transcriptional repressor MraZ -
  N4S13_RS11185 (N4S13_11185) - 2206393..2206764 (-) 372 WP_010745912.1 DUF3397 domain-containing protein -
  N4S13_RS11190 (N4S13_11190) - 2206992..2207108 (+) 117 WP_010740492.1 DUF4044 domain-containing protein -
  N4S13_RS11195 (N4S13_11195) recN 2207135..2208805 (-) 1671 WP_028020322.1 DNA repair protein RecN Machinery gene
  N4S13_RS11200 (N4S13_11200) - 2208834..2209292 (-) 459 WP_028020323.1 arginine repressor -
  N4S13_RS11205 (N4S13_11205) - 2209308..2210123 (-) 816 WP_028020324.1 TlyA family RNA methyltransferase -
  N4S13_RS11210 (N4S13_11210) - 2210168..2211052 (-) 885 WP_010745907.1 polyprenyl synthetase family protein -
  N4S13_RS11215 (N4S13_11215) - 2211052..2211273 (-) 222 WP_028020325.1 exodeoxyribonuclease VII small subunit -
  N4S13_RS11220 (N4S13_11220) xseA 2211273..2212607 (-) 1335 WP_010745905.1 exodeoxyribonuclease VII large subunit -
  N4S13_RS11225 (N4S13_11225) - 2212623..2213480 (-) 858 WP_028020326.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 556 a.a.        Molecular weight: 62859.28 Da        Isoelectric Point: 4.6028

>NTDB_id=729494 N4S13_RS11195 WP_028020322.1 2207135..2208805(-) (recN) [Enterococcus raffinosus strain HG-5]
MLQELTIKNFAIISSLHLGFTDGMTALTGETGAGKSIIIDAVSLLAGARSSIEYIRQGSDKCLVEGLFDLPKQHEFSLLM
EELGIEVDDAGLIVQRDLNISGKSVSRVNGRIITLANLRRIGQFLVDIQGQNDHQELMHPESHLRLLDSFGDSAFQEKKN
RYQTAYHSYITLMNQVRKFKQNEQSFVQRIDMLTFQQEEIGNAELSIGEEEKLMEEREKLTNYQKIVDSLSYSYQAMTNE
ETNSLDAIGSASQELQTIASLDADYESISDNVHSAYYLLQDAVSEIGRQLDLLELDEERLDIVNERLELIHQLKRKYGDS
IEIILNYYDKISEELLDSDFSGDKLERLEKELYEKENELKHLAEMLQVARKKMAKKLESAIQNELKDLYMENARFEVSFK
ESSFNAEGVDEVEFYITTNPGEPLKPLVKVASGGEISRVMLALKTIFSKTQGLTSIVFDEVDTGVSGRVAQAIADKIYQI
GLNSQALCITHLPQVAAKADHQLFIRKEIVDGRTLTKVEELTERDRIDEIARMLAGAEITDLTVKHAKELLQLAKK

Nucleotide


Download         Length: 1671 bp        

>NTDB_id=729494 N4S13_RS11195 WP_028020322.1 2207135..2208805(-) (recN) [Enterococcus raffinosus strain HG-5]
ATGTTGCAAGAGCTAACAATCAAAAATTTTGCGATCATTTCTTCGTTGCATTTAGGATTTACTGATGGAATGACAGCTCT
AACTGGCGAAACAGGCGCTGGAAAATCAATTATTATTGATGCAGTTAGCTTGTTAGCTGGAGCTCGTTCATCCATCGAAT
ATATTCGCCAAGGTAGTGATAAATGTTTAGTTGAGGGGCTTTTTGATTTGCCTAAGCAACATGAGTTCAGTCTACTAATG
GAAGAACTTGGAATTGAAGTAGATGATGCAGGATTGATTGTTCAAAGAGATTTGAATATCTCAGGAAAAAGTGTCTCACG
AGTGAACGGAAGAATTATTACTTTGGCGAACTTACGAAGAATTGGTCAATTCTTAGTAGACATTCAAGGCCAAAACGACC
ACCAGGAATTGATGCATCCAGAATCGCATCTCCGTCTTTTAGATAGTTTTGGTGACTCGGCTTTTCAAGAGAAAAAAAAT
AGGTATCAGACCGCGTATCATAGCTATATAACTTTAATGAATCAAGTTAGGAAATTTAAACAAAATGAACAATCTTTTGT
TCAAAGAATCGATATGCTAACTTTTCAACAAGAAGAAATTGGAAATGCAGAGCTATCTATTGGTGAAGAAGAAAAACTGA
TGGAAGAGCGGGAGAAACTTACGAACTATCAGAAAATAGTAGATAGTCTTTCTTATAGTTATCAAGCTATGACAAATGAA
GAAACAAACTCTTTAGACGCGATAGGTTCAGCTAGTCAGGAACTTCAAACAATAGCTTCTTTAGATGCTGACTATGAAAG
CATTTCTGATAATGTTCATAGTGCCTATTATCTTTTGCAAGATGCGGTCAGTGAAATCGGGCGTCAATTAGATTTGCTAG
AGTTAGATGAGGAGCGCTTGGATATAGTTAATGAAAGGCTTGAACTAATTCATCAATTGAAAAGAAAGTATGGAGATTCG
ATCGAGATCATTCTAAACTATTATGATAAGATTAGTGAAGAACTTTTGGATTCAGACTTCTCTGGAGACAAATTGGAAAG
ATTAGAAAAAGAACTATATGAAAAAGAAAACGAATTAAAACACTTAGCTGAGATGTTACAAGTGGCGCGAAAAAAGATGG
CGAAAAAATTAGAATCAGCAATCCAAAATGAACTGAAGGATTTGTACATGGAGAATGCTCGGTTTGAAGTTAGTTTTAAA
GAGAGCTCTTTTAATGCAGAGGGAGTAGATGAGGTAGAGTTTTACATAACGACTAATCCTGGAGAGCCATTGAAACCTCT
AGTTAAAGTGGCATCAGGAGGAGAAATTTCTCGAGTCATGTTGGCTTTAAAGACCATTTTCTCAAAAACTCAGGGATTAA
CGAGTATTGTTTTTGATGAAGTAGATACTGGAGTGAGTGGGCGAGTCGCCCAAGCGATTGCAGACAAGATTTATCAAATT
GGTCTGAATTCACAGGCCTTATGTATCACTCATTTACCTCAAGTAGCTGCTAAAGCCGATCATCAACTATTTATTCGTAA
AGAGATAGTTGATGGAAGGACTTTAACTAAGGTAGAGGAGTTAACTGAAAGGGATCGTATTGACGAAATTGCTCGTATGT
TAGCAGGAGCAGAGATTACAGATTTAACTGTCAAGCATGCAAAAGAATTATTGCAATTAGCAAAAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.772

100

0.5