Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   N4S13_RS04545 Genome accession   NZ_CP104392
Coordinates   920824..922641 (+) Length   605 a.a.
NCBI ID   WP_028020717.1    Uniprot ID   A0AAW8SV09
Organism   Enterococcus raffinosus strain HG-5     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 915824..927641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4S13_RS04520 (N4S13_04520) - 916149..916868 (-) 720 WP_010746504.1 HAD family hydrolase -
  N4S13_RS04525 (N4S13_04525) spxA 917648..918046 (+) 399 WP_010739854.1 transcriptional regulator SpxA -
  N4S13_RS04530 (N4S13_04530) - 918082..918687 (-) 606 WP_010746502.1 HAD family hydrolase -
  N4S13_RS04535 (N4S13_04535) - 918911..919555 (+) 645 WP_010746501.1 adaptor protein MecA -
  N4S13_RS04540 (N4S13_04540) - 919693..920691 (+) 999 WP_010746500.1 competence protein CoiA -
  N4S13_RS04545 (N4S13_04545) pepF 920824..922641 (+) 1818 WP_028020717.1 oligoendopeptidase F Regulator
  N4S13_RS04550 (N4S13_04550) - 922712..924019 (-) 1308 WP_010743765.1 ISL3 family transposase -
  N4S13_RS04555 (N4S13_04555) - 924458..925636 (+) 1179 WP_028020718.1 class C sortase -
  N4S13_RS04560 (N4S13_04560) - 925638..926816 (+) 1179 WP_010746497.1 class C sortase -
  N4S13_RS04565 (N4S13_04565) - 926851..927495 (-) 645 WP_010746496.1 DsbA family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69252.82 Da        Isoelectric Point: 4.5898

>NTDB_id=729480 N4S13_RS04545 WP_028020717.1 920824..922641(+) (pepF) [Enterococcus raffinosus strain HG-5]
MSEAKQLPKRQEVPTELTWDLTKIFTDDAAFETKFQALSDELTEVDKIKGSLGKGAAEFLTAIEYVLDIYRKAEVIYVYA
HLKNDEDTANTTNQALYARASSLIAQVSEAVSWFEPEMLELSDQEIWSFFEAEPKLELYLHFVEQIISERAHVLPAEQEA
LLAGASEIFSSSADTFSVMNNADLKFPVVQNEAGEDVQLTHGVYGQLLESTDRKVREQAFKALYSVYHQFRNTFASTLST
HIKGHNYKAKIRGYASARAAALSGNHIPEDVYETLTLVVNQYLPLLHRYVELRKELLGLEELHMYDLYTPLLAEAPVKFT
YEEAQAKALEALKPLGEEYLEVVKKAFDERWIDVVENQGKRSGAYSSGAYDTQPYILLNWHDRLDELYTLVHEMGHSVHS
YFTRHTQPYVYGDYSIFLAEIASTTNENLLTSYLLETEKDPKIRAYIINHFLDGFKGTIFRQTQFAEFEHFIHTEDAAGN
PLTSEHLSKFYGELNAKYYGPIVVNDEEIKDEWSRIPHFYYNYYVYQYATGFSAASALAKRIVEGEPDALEKYLTYLKSG
SSDYPIEVMKKAGVDMTQPTYIEDAMEIFALRLDELEQLVQELKA

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=729480 N4S13_RS04545 WP_028020717.1 920824..922641(+) (pepF) [Enterococcus raffinosus strain HG-5]
ATGAGTGAAGCAAAACAATTGCCAAAACGGCAGGAAGTACCCACTGAACTGACTTGGGACTTAACTAAAATTTTTACAGA
TGACGCCGCCTTTGAAACAAAATTCCAGGCCTTATCTGATGAACTGACTGAAGTGGACAAGATCAAAGGGAGTTTAGGAA
AAGGTGCGGCCGAATTTTTAACGGCGATCGAATATGTCTTAGATATTTATCGTAAGGCGGAAGTCATTTATGTATATGCT
CATTTAAAAAATGATGAAGATACCGCCAATACGACGAACCAAGCATTGTATGCGCGAGCTTCTAGCTTAATTGCACAAGT
GAGTGAAGCGGTTAGCTGGTTTGAGCCAGAAATGCTGGAGCTTTCTGACCAAGAAATCTGGTCATTTTTCGAAGCAGAGC
CCAAATTAGAATTATATCTTCATTTTGTTGAGCAGATCATTTCAGAGCGAGCGCATGTCTTGCCGGCTGAACAGGAAGCC
TTATTAGCAGGAGCCAGTGAAATTTTCAGCAGCTCAGCAGATACTTTTTCTGTCATGAACAACGCCGATCTTAAATTTCC
AGTGGTACAAAATGAAGCAGGCGAAGATGTTCAATTAACACACGGTGTGTATGGTCAATTATTGGAAAGCACGGATCGAA
AGGTGAGAGAACAAGCCTTTAAGGCGCTGTACTCAGTGTACCATCAATTCCGTAACACCTTTGCTTCAACCTTAAGCACG
CATATTAAAGGGCATAATTACAAGGCGAAGATTCGCGGATATGCCTCTGCGCGGGCGGCTGCACTTAGCGGAAATCATAT
CCCGGAAGATGTTTATGAAACATTGACGCTAGTAGTCAACCAATATTTACCTCTATTGCATCGTTATGTGGAATTACGGA
AAGAGCTGCTCGGTTTAGAAGAACTGCACATGTATGATTTGTACACACCGCTTTTAGCAGAAGCGCCAGTGAAGTTCACT
TACGAAGAAGCACAGGCAAAAGCGTTAGAAGCATTGAAACCACTAGGTGAGGAATACTTAGAAGTCGTTAAAAAAGCCTT
CGATGAACGCTGGATTGATGTTGTGGAAAATCAAGGGAAGCGCAGCGGGGCCTACTCTTCTGGTGCCTATGACACACAGC
CATATATTTTATTAAACTGGCATGATCGCCTAGATGAATTGTATACATTGGTACATGAGATGGGTCATAGTGTTCATAGC
TATTTCACACGACACACGCAACCTTATGTTTACGGTGATTACTCCATCTTCTTAGCCGAAATTGCTTCAACAACCAATGA
GAATCTTTTGACCAGCTATCTATTGGAAACAGAAAAAGATCCCAAAATTCGGGCCTATATCATTAATCATTTCTTAGATG
GCTTTAAGGGAACGATTTTCCGTCAGACGCAATTCGCGGAGTTTGAGCACTTTATTCATACAGAAGATGCTGCAGGAAAT
CCATTAACTAGCGAACACCTAAGCAAGTTTTACGGGGAACTAAACGCGAAGTATTATGGACCAATCGTAGTGAATGACGA
AGAAATCAAGGATGAATGGTCAAGAATTCCGCATTTCTACTATAATTACTATGTTTACCAATATGCGACTGGTTTTTCTG
CAGCAAGTGCCTTAGCGAAACGAATCGTAGAAGGCGAGCCAGATGCATTAGAAAAATACTTAACCTACTTAAAATCCGGC
AGCAGTGATTACCCAATCGAGGTCATGAAGAAGGCAGGGGTTGATATGACTCAGCCAACCTATATTGAAGATGCGATGGA
AATTTTTGCGCTACGATTAGATGAGCTGGAACAACTTGTCCAAGAACTAAAGGCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

55.051

98.182

0.541