Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   N4S13_RS03525 Genome accession   NZ_CP104392
Coordinates   717386..718108 (-) Length   240 a.a.
NCBI ID   WP_028020175.1    Uniprot ID   A0AAP5NEV2
Organism   Enterococcus raffinosus strain HG-5     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 712386..723108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4S13_RS03495 (N4S13_03495) - 712688..713248 (+) 561 WP_010746702.1 TetR/AcrR family transcriptional regulator -
  N4S13_RS03500 (N4S13_03500) - 713367..713804 (+) 438 WP_010746701.1 DUF948 domain-containing protein -
  N4S13_RS03505 (N4S13_03505) - 713807..714373 (+) 567 WP_010746700.1 YtxH domain-containing protein -
  N4S13_RS03510 (N4S13_03510) - 714485..714730 (+) 246 WP_010746699.1 helix-turn-helix transcriptional regulator -
  N4S13_RS03515 (N4S13_03515) - 715041..716141 (-) 1101 WP_010746698.1 Xaa-Pro peptidase family protein -
  N4S13_RS03520 (N4S13_03520) ccpA 716335..717339 (+) 1005 WP_010746697.1 catabolite control protein A -
  N4S13_RS03525 (N4S13_03525) treR 717386..718108 (-) 723 WP_028020175.1 trehalose operon repressor Regulator
  N4S13_RS03530 (N4S13_03530) treP 718484..720430 (+) 1947 WP_010746695.1 PTS system trehalose-specific EIIBC component -
  N4S13_RS03535 (N4S13_03535) treC 720446..722068 (+) 1623 WP_010746694.1 alpha,alpha-phosphotrehalase -
  N4S13_RS03540 (N4S13_03540) - 722102..722608 (-) 507 WP_010746693.1 QueT transporter family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27790.74 Da        Isoelectric Point: 8.0018

>NTDB_id=729475 N4S13_RS03525 WP_028020175.1 717386..718108(-) (treR) [Enterococcus raffinosus strain HG-5]
MKNYEVIYQAIERGILKGVYEAGSYLPSENKLRQTYHVSRDTIRKALSLLMANGYIQKIQGKGSLVLKREQLRFPVSGLT
SYKELQNSYGYDSSTDVISLKKVMINEKEARVTGFEIGAVCWELIRTRAIDQKKVILDKDLLLTTVVPELDTEIAKDSIY
RYFENQLGLNIAFAEKEITIDALTDEDRELLDLNQHDINIVSVKSRVFTSDARQFQYTESRHQVDKFRFFDFARRHPSTM

Nucleotide


Download         Length: 723 bp        

>NTDB_id=729475 N4S13_RS03525 WP_028020175.1 717386..718108(-) (treR) [Enterococcus raffinosus strain HG-5]
ATGAAAAATTATGAGGTGATTTACCAAGCAATCGAACGAGGAATTTTAAAAGGCGTTTATGAAGCGGGTTCTTATTTGCC
TAGTGAAAACAAATTGCGTCAAACCTACCATGTATCACGCGATACGATTCGCAAAGCCTTGTCTCTTCTGATGGCTAATG
GCTACATTCAAAAAATTCAAGGTAAAGGTTCACTTGTTTTGAAGCGAGAGCAGCTGCGATTTCCTGTTTCTGGTTTAACG
AGTTACAAGGAACTCCAAAATTCTTATGGCTATGACAGTAGTACGGACGTTATTAGTTTAAAGAAAGTTATGATTAATGA
AAAGGAAGCACGTGTGACTGGATTTGAAATCGGGGCTGTCTGCTGGGAATTGATTCGTACACGAGCGATCGACCAGAAAA
AAGTAATACTTGATAAAGACCTATTACTGACGACAGTTGTGCCTGAGCTAGATACTGAAATCGCAAAGGATTCCATTTAT
CGCTACTTTGAAAATCAATTGGGGTTGAATATCGCTTTTGCTGAAAAGGAAATCACGATTGATGCCCTGACTGATGAAGA
TCGAGAACTATTGGATCTTAATCAGCATGATATCAATATTGTTTCTGTAAAAAGTCGTGTATTTACTAGTGATGCTCGGC
AATTTCAATACACAGAAAGTCGTCACCAGGTGGATAAATTCCGCTTTTTCGATTTTGCACGACGACACCCTTCAACAATG
TAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-66)

UTRA domain (UTRA)

(89-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

50.847

98.333

0.5