Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   N4S13_RS00545 Genome accession   NZ_CP104392
Coordinates   110467..111414 (-) Length   315 a.a.
NCBI ID   WP_028020408.1    Uniprot ID   -
Organism   Enterococcus raffinosus strain HG-5     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 105467..116414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4S13_RS00520 (N4S13_00520) - 105626..107200 (+) 1575 WP_240145453.1 hypothetical protein -
  N4S13_RS00525 (N4S13_00525) arr 107266..107676 (+) 411 WP_010747320.1 NAD(+)--rifampin ADP-ribosyltransferase -
  N4S13_RS00530 (N4S13_00530) - 107714..108682 (-) 969 WP_010747319.1 siderophore ABC transporter substrate-binding protein -
  N4S13_RS00535 (N4S13_00535) - 108747..109505 (-) 759 WP_010747318.1 ABC transporter ATP-binding protein -
  N4S13_RS00540 (N4S13_00540) - 109502..110470 (-) 969 WP_010747317.1 iron chelate uptake ABC transporter family permease subunit -
  N4S13_RS00545 (N4S13_00545) ceuB 110467..111414 (-) 948 WP_028020408.1 ABC transporter permease Machinery gene
  N4S13_RS00550 (N4S13_00550) - 111682..111882 (-) 201 WP_010747315.1 DUF4177 domain-containing protein -
  N4S13_RS00555 (N4S13_00555) - 112018..112383 (-) 366 WP_028020409.1 MerR family transcriptional regulator -
  N4S13_RS00560 (N4S13_00560) - 112482..112859 (+) 378 WP_010747313.1 carboxymuconolactone decarboxylase family protein -
  N4S13_RS00565 (N4S13_00565) - 112967..113734 (+) 768 WP_010747312.1 SDR family NAD(P)-dependent oxidoreductase -
  N4S13_RS00570 (N4S13_00570) - 113884..115428 (+) 1545 WP_010747311.1 zinc ribbon domain-containing protein -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34315.42 Da        Isoelectric Point: 10.1435

>NTDB_id=729464 N4S13_RS00545 WP_028020408.1 110467..111414(-) (ceuB) [Enterococcus raffinosus strain HG-5]
MKRKGIILGLLLLSALSLFIGVKELMLQGLLRGDSEQWLILATTRVPRTVSLLLAGATMSICGLIMQHLTQNKFVSPTTA
GTMDSARLGILLVMLFLPNASTSIRTLAAFVFAFLGTLIFLGLSRLLPNKDPIFLPLLGVMFGNIVGSVATFFAYQFQLI
QNMSSWLQGNFSLVAKGSYELLYLTIPLFFIIYLFAYSFTIVGLGEDVAVNLGVNYRLMQMLGIGLVAAASGLVLIMVGT
VPFLGVIVPNIVSLIYGDHVKQNLWITALSGSLFLMACDIISRIVIAPYEVPVSLTVGILGSLIFIYLLVRRRRA

Nucleotide


Download         Length: 948 bp        

>NTDB_id=729464 N4S13_RS00545 WP_028020408.1 110467..111414(-) (ceuB) [Enterococcus raffinosus strain HG-5]
TTGAAAAGAAAAGGAATTATACTTGGTCTACTTTTGTTAAGCGCTCTCTCTTTATTTATCGGAGTCAAAGAGTTGATGCT
GCAGGGGTTGCTTCGAGGCGATTCTGAGCAATGGCTGATCCTAGCCACTACGCGTGTTCCGCGAACCGTCAGCTTGCTTT
TAGCCGGCGCGACGATGAGTATTTGCGGTCTGATTATGCAGCATCTCACACAAAATAAATTTGTTTCACCAACAACAGCG
GGCACGATGGATAGTGCTCGATTGGGGATTTTACTGGTAATGCTTTTTCTGCCAAATGCCTCTACCAGTATTCGGACGCT
TGCCGCCTTTGTTTTTGCTTTTCTCGGAACCTTGATTTTTTTAGGACTAAGCCGACTGCTTCCAAATAAAGATCCAATAT
TTTTGCCTTTGCTGGGTGTGATGTTCGGCAATATCGTTGGTTCTGTCGCGACCTTTTTTGCTTATCAGTTTCAACTGATC
CAAAATATGTCCTCCTGGCTGCAGGGAAACTTTTCGTTAGTCGCCAAAGGCAGCTATGAGCTGCTCTATCTGACGATTCC
TTTATTTTTCATCATTTATCTATTTGCCTATTCCTTCACAATTGTTGGCTTAGGTGAAGATGTGGCGGTTAATTTAGGTG
TCAATTATCGGTTGATGCAAATGCTTGGGATCGGTTTGGTCGCTGCCGCCAGCGGATTGGTATTGATCATGGTAGGGACA
GTGCCTTTTTTAGGCGTGATCGTTCCAAATATCGTTTCCCTGATCTATGGAGATCATGTAAAGCAAAATCTATGGATTAC
CGCGTTGAGCGGCAGTTTGTTTTTAATGGCCTGCGATATTATTTCCCGCATCGTCATCGCCCCCTATGAAGTGCCTGTCA
GTCTAACAGTAGGGATTTTAGGTAGTCTGATATTTATTTATCTATTGGTTAGGAGGAGACGTGCATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.316

96.508

0.495