Detailed information NTG0072944

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LDN98_RS21500
• Genome accession: NZ_AP024518
• Coordinates: 4411233..4412258 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain E148
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4406233..4417258

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDN98_RS21470 (NIAHE148_41210)	zapB	4406317..4406562 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
LDN98_RS21475 (NIAHE148_41220)	rraA	4406647..4407132 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
LDN98_RS21480 (NIAHE148_41230)	menA	4407225..4408151 (-)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LDN98_RS21485 (NIAHE148_41240)	hslU	4408218..4409549 (-)	1332	WP_001293343.1	HslU--HslV peptidase ATPase subunit	-
LDN98_RS21490 (NIAHE148_41250)	hslV	4409559..4410089 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
LDN98_RS21495 (NIAHE148_41260)	ftsN	4410182..4411141 (-)	960	WP_000068834.1	cell division protein FtsN	-
LDN98_RS21500 (NIAHE148_41270)	cytR	4411233..4412258 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
LDN98_RS21505 (NIAHE148_41280)	priA	4412414..4414612 (-)	2199	WP_001298972.1	primosomal protein N'	Machinery gene
LDN98_RS21510 (NIAHE148_41290)	rpmE	4414815..4415027 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
LDN98_RS21515 (NIAHE148_41300)	-	4415082..4415705 (-)	624	WP_001402674.1	TIGR02117 family protein	-
LDN98_RS21520 (NIAHE148_41310)	yiiX	4415712..4416320 (-)	609	WP_001402675.1	YiiX family permuted papain-like enzyme	-
LDN98_RS21525 (NIAHE148_41320)	metJ	4416380..4416697 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=72944 LDN98_RS21500 WP_000644904.1 4411233..4412258(-) (cytR) [Escherichia coli strain E148]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=72944 LDN98_RS21500 WP_000644904.1 4411233..4412258(-) (cytR) [Escherichia coli strain E148]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTCGCACCGGAACTGGAG
CTACCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATCTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628