Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   N4Q31_RS10225 Genome accession   NZ_CP104391
Coordinates   2024491..2025126 (+) Length   211 a.a.
NCBI ID   WP_058837936.1    Uniprot ID   -
Organism   Bacillus safensis strain GX-H6     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2019491..2030126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4Q31_RS10185 (N4Q31_10185) - 2019649..2020767 (+) 1119 WP_260776095.1 NADH-dependent flavin oxidoreductase -
  N4Q31_RS10190 (N4Q31_10190) - 2020821..2021327 (-) 507 WP_039183169.1 PTS glucose transporter subunit IIA -
  N4Q31_RS10195 (N4Q31_10195) - 2021497..2021916 (+) 420 WP_260773931.1 Hsp20/alpha crystallin family protein -
  N4Q31_RS10200 (N4Q31_10200) - 2021937..2022389 (-) 453 WP_039179462.1 YppG family protein -
  N4Q31_RS10205 (N4Q31_10205) - 2022498..2022878 (-) 381 WP_235354764.1 YppE family protein -
  N4Q31_RS10210 (N4Q31_10210) - 2022928..2023164 (-) 237 WP_039179468.1 DUF5446 family protein -
  N4Q31_RS10215 (N4Q31_10215) sspM 2023359..2023463 (+) 105 WP_039179471.1 acid-soluble spore protein SspM -
  N4Q31_RS10220 (N4Q31_10220) - 2023488..2024444 (-) 957 WP_047203238.1 DUF2515 domain-containing protein -
  N4Q31_RS10225 (N4Q31_10225) recU 2024491..2025126 (+) 636 WP_058837936.1 Holliday junction resolvase RecU Machinery gene
  N4Q31_RS10230 (N4Q31_10230) - 2025146..2027863 (+) 2718 WP_099663379.1 PBP1A family penicillin-binding protein -
  N4Q31_RS10235 (N4Q31_10235) - 2028104..2028613 (-) 510 WP_144490268.1 YpoC family protein -
  N4Q31_RS10240 (N4Q31_10240) nth 2028610..2029272 (-) 663 WP_024422776.1 endonuclease III -
  N4Q31_RS10245 (N4Q31_10245) - 2029290..2029994 (-) 705 WP_041085852.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24315.67 Da        Isoelectric Point: 9.7504

>NTDB_id=729432 N4Q31_RS10225 WP_058837936.1 2024491..2025126(+) (recU) [Bacillus safensis strain GX-H6]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLPASDLFFFWERQK
QNGRKSISKDELMEAGHIMTLGYSPRIDYIKVVETLHFSDESKQQLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=729432 N4Q31_RS10225 WP_058837936.1 2024491..2025126(+) (recU) [Bacillus safensis strain GX-H6]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACGCTTGAGGCTGATTTAAATGAAACGAACCAATACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCAGTTCAAATTGTGAATGTGGATTATCCAAAAAGAAGTGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTATAACGGGGTGTACAAAGGCCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACTACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGCATTT
GTTTCGTTATTATATCCGCTTTTGGCTCCGTTTATTATTTGCCCGCTTCAGATCTCTTTTTCTTCTGGGAGCGGCAGAAG
CAAAACGGCCGTAAATCCATTAGCAAAGACGAATTAATGGAAGCTGGCCACATAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGCAAGCAGCAATTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697