Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   N4Q31_RS08830 Genome accession   NZ_CP104391
Coordinates   1750293..1750673 (+) Length   126 a.a.
NCBI ID   WP_228280000.1    Uniprot ID   -
Organism   Bacillus safensis strain GX-H6     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1745293..1755673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4Q31_RS08820 (N4Q31_08820) - 1745787..1748930 (+) 3144 WP_260775973.1 bifunctional cytochrome P450/NADPH--P450 reductase -
  N4Q31_RS08825 (N4Q31_08825) - 1749125..1750033 (+) 909 WP_144491261.1 serine protease -
  N4Q31_RS08830 (N4Q31_08830) nucA/comI 1750293..1750673 (+) 381 WP_228280000.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  N4Q31_RS08835 (N4Q31_08835) - 1750821..1751669 (+) 849 WP_039178899.1 STAS domain-containing protein -
  N4Q31_RS08840 (N4Q31_08840) - 1751702..1752244 (-) 543 WP_039178902.1 IseA DL-endopeptidase inhibitor family protein -
  N4Q31_RS08845 (N4Q31_08845) - 1752542..1752988 (+) 447 WP_039178904.1 hypothetical protein -
  N4Q31_RS08850 (N4Q31_08850) lexA 1753034..1753654 (-) 621 WP_024425129.1 transcriptional repressor LexA -
  N4Q31_RS08855 (N4Q31_08855) yneA 1753813..1754124 (+) 312 WP_034283425.1 cell division suppressor protein YneA -
  N4Q31_RS08860 (N4Q31_08860) - 1754142..1754789 (+) 648 WP_251180783.1 recombinase family protein -
  N4Q31_RS08865 (N4Q31_08865) - 1754859..1755089 (+) 231 WP_024425132.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13757.50 Da        Isoelectric Point: 8.5068

>NTDB_id=729431 N4Q31_RS08830 WP_228280000.1 1750293..1750673(+) (nucA/comI) [Bacillus safensis strain GX-H6]
MGMLLGGFGEKQAAKGADRYDHVVQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGFPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=729431 N4Q31_RS08830 WP_228280000.1 1750293..1750673(+) (nucA/comI) [Bacillus safensis strain GX-H6]
ATGGGCATGTTGTTAGGTGGATTTGGAGAGAAGCAGGCAGCAAAAGGGGCTGATCGATATGATCATGTCGTTCAATTTCC
AAAGGAAAGGTACCCTGAAACAGGCAGTCATATTCAAGAAGCCATTCGAAAAGGGCATTCAGATGTGTGTACCATTGACA
GGAATGGAGCAGATGCCCGCAGGCAAGAATCATTAAAAGGGATTCCGACAAAACCTGGATTTGACCGGGATGAATGGCCG
ATGGCGGTTTGTCTTGAGGGAGGAAAAGGCGCAAGCGTTCAATATGTCAGTCCATCTGATAATAGGGGAGCAGGCTCATG
GGTCGGGCACCAAATCAGCGGATTTCCTGATGGGAAAAGAATATTATTCATTGTGAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.349

100

0.563