Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   N4Q31_RS07935 Genome accession   NZ_CP104391
Coordinates   1564969..1565871 (+) Length   300 a.a.
NCBI ID   WP_251180742.1    Uniprot ID   -
Organism   Bacillus safensis strain GX-H6     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1559969..1570871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4Q31_RS07915 (N4Q31_07915) - 1560632..1562371 (+) 1740 WP_260775928.1 glycosyltransferase -
  N4Q31_RS07920 (N4Q31_07920) - 1562368..1562643 (+) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  N4Q31_RS07925 (N4Q31_07925) sucC 1562820..1563980 (+) 1161 WP_024426972.1 ADP-forming succinate--CoA ligase subunit beta -
  N4Q31_RS07930 (N4Q31_07930) sucD 1564003..1564905 (+) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  N4Q31_RS07935 (N4Q31_07935) dprA 1564969..1565871 (+) 903 WP_251180742.1 DNA-processing protein DprA Machinery gene
  N4Q31_RS07940 (N4Q31_07940) topA 1566065..1568140 (+) 2076 WP_058837708.1 type I DNA topoisomerase -
  N4Q31_RS07945 (N4Q31_07945) trmFO 1568211..1569515 (+) 1305 WP_034317774.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  N4Q31_RS07950 (N4Q31_07950) xerC 1569578..1570495 (+) 918 WP_058837707.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34158.49 Da        Isoelectric Point: 8.5955

>NTDB_id=729427 N4Q31_RS07935 WP_251180742.1 1564969..1565871(+) (dprA) [Bacillus safensis strain GX-H6]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRSLQTIDFTRLKQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSTLKNIYDPPPVLFLKGNVSYLNEEKSLGVVGTRLPSSYGEACVKKIVGELVKEEWMIVSGLAKGIDGLAH
KECIREKGKTIGIIAGGFQHLYPKEHAQMAQYMGEHHLLLSEHPPYVKPEKWHFPMRNRLISALTRGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSTGPARLIQQGAKLVHSTKDILDEFSFRSVQYTELS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=729427 N4Q31_RS07935 WP_251180742.1 1564969..1565871(+) (dprA) [Bacillus safensis strain GX-H6]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCATTACTTACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTTAAACAGGATCGATCATTACAAACGATCGACTTTACCC
GCTTAAAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATTCCCATCACATCACCCTTATATCCAAGCACACTAAAAAATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CGTATCATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTCGGCACGCGACTTCCATCGTCTTATGGAGAAGCATGTGTGA
AAAAAATTGTTGGTGAGCTTGTCAAAGAAGAGTGGATGATTGTTAGTGGGCTAGCTAAAGGAATCGATGGACTGGCACAT
AAAGAGTGCATCAGGGAAAAAGGGAAAACGATCGGCATTATAGCCGGCGGCTTTCAGCATTTATACCCAAAAGAGCATGC
GCAAATGGCTCAATACATGGGCGAGCATCATTTGCTTTTGTCAGAGCATCCGCCTTATGTCAAACCAGAAAAGTGGCATT
TTCCAATGAGAAATCGTTTAATTAGTGCGTTGACGAGAGGAACCATTGTCATTCAGTGCAAAGAAAAGAGCGGTTCTCTT
ATTACAGCCTATCAAGCACTTGAGCAAGGAAAAGAAGTATTTGCGGTTGCCGGATCGATCTTTGATCCTAATTCCACAGG
GCCGGCAAGACTCATTCAGCAGGGGGCAAAGCTTGTTCATTCCACAAAGGATATTTTAGATGAATTCTCCTTCCGCAGCG
TTCAATATACTGAACTCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.704

95.667

0.523
  dprA Legionella pneumophila strain ERS1305867

38.361

100

0.39