Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   N4Q31_RS07090 Genome accession   NZ_CP104391
Coordinates   1398574..1398852 (+) Length   92 a.a.
NCBI ID   WP_017359400.1    Uniprot ID   A0A9X0FXL5
Organism   Bacillus safensis strain GX-H6     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1393574..1403852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4Q31_RS07065 (N4Q31_07065) - 1393670..1393945 (-) 276 WP_041084975.1 hypothetical protein -
  N4Q31_RS07070 (N4Q31_07070) - 1394089..1395708 (+) 1620 WP_041084974.1 ABC-F family ATP-binding cassette domain-containing protein -
  N4Q31_RS07075 (N4Q31_07075) - 1395744..1396976 (-) 1233 WP_058837765.1 aminopeptidase -
  N4Q31_RS07080 (N4Q31_07080) - 1397084..1397215 (-) 132 WP_003210922.1 protein YkpC -
  N4Q31_RS07085 (N4Q31_07085) mreBH 1397290..1398297 (-) 1008 WP_024424745.1 rod-share determining protein MreBH -
  N4Q31_RS07090 (N4Q31_07090) abrB 1398574..1398852 (+) 279 WP_017359400.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  N4Q31_RS07095 (N4Q31_07095) - 1398997..1400307 (+) 1311 WP_260775900.1 ATP-binding protein -
  N4Q31_RS07100 (N4Q31_07100) - 1400312..1401148 (+) 837 WP_260775901.1 gamma-glutamylcyclotransferase -
  N4Q31_RS07105 (N4Q31_07105) - 1401186..1401854 (+) 669 WP_008345123.1 TrkA family potassium uptake protein -
  N4Q31_RS07110 (N4Q31_07110) ade 1402117..1403847 (+) 1731 WP_260775902.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10305.97 Da        Isoelectric Point: 4.5332

>NTDB_id=729426 N4Q31_RS07090 WP_017359400.1 1398574..1398852(+) (abrB) [Bacillus safensis strain GX-H6]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=729426 N4Q31_RS07090 WP_017359400.1 1398574..1398852(+) (abrB) [Bacillus safensis strain GX-H6]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTCATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGTGTTT
GTCTCATGACTGGTGAGATTACATCAGAGAACCATGAATACGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTGCTGTTAAAAGAGCTGCAAGAAGCTCTTCAGCAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.348

100

0.543