Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   N4Q31_RS06980 Genome accession   NZ_CP104391
Coordinates   1378624..1379196 (+) Length   190 a.a.
NCBI ID   WP_024426871.1    Uniprot ID   -
Organism   Bacillus safensis strain GX-H6     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1373624..1384196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4Q31_RS06950 (N4Q31_06950) dapD 1373750..1374460 (+) 711 WP_039178160.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  N4Q31_RS06955 (N4Q31_06955) - 1374495..1375673 (+) 1179 WP_260775892.1 N-acetyldiaminopimelate deacetylase -
  N4Q31_RS06960 (N4Q31_06960) - 1375724..1375966 (+) 243 WP_024424725.1 YkuS family protein -
  N4Q31_RS06965 (N4Q31_06965) - 1375989..1376798 (-) 810 WP_024424726.1 mechanosensitive ion channel family protein -
  N4Q31_RS06970 (N4Q31_06970) ahpA 1377070..1377612 (+) 543 WP_003211758.1 biofilm-specific peroxidase AhpA -
  N4Q31_RS06975 (N4Q31_06975) - 1377695..1378153 (+) 459 WP_024424727.1 TlpA disulfide reductase family protein -
  N4Q31_RS06980 (N4Q31_06980) rok 1378624..1379196 (+) 573 WP_024426871.1 transcriptional regulator Rok Regulator
  N4Q31_RS06985 (N4Q31_06985) - 1379245..1380159 (-) 915 WP_260775893.1 sigmaE regulated sporulation protein -
  N4Q31_RS06990 (N4Q31_06990) - 1380244..1380825 (+) 582 WP_058837776.1 molybdenum cofactor guanylyltransferase -
  N4Q31_RS06995 (N4Q31_06995) - 1380857..1381873 (+) 1017 WP_058837775.1 ThiF family adenylyltransferase -
  N4Q31_RS07000 (N4Q31_07000) glp 1381883..1383160 (+) 1278 WP_260775894.1 gephyrin-like molybdotransferase Glp -
  N4Q31_RS07005 (N4Q31_07005) mobB 1383142..1383666 (+) 525 WP_260775895.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  N4Q31_RS07010 (N4Q31_07010) - 1383663..1384154 (+) 492 WP_058837772.1 molybdenum cofactor biosynthesis protein MoaE -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 21543.50 Da        Isoelectric Point: 9.7309

>NTDB_id=729425 N4Q31_RS06980 WP_024426871.1 1378624..1379196(+) (rok) [Bacillus safensis strain GX-H6]
MFNEREALRLRLEQLNEAEVKVIREYQIERDAIYAKLRELDRQGTGLVSDTKKEVRTERKTDSLPVLAELAAQEMRSYQQ
PAQPQSSSLGTGQLNGAPVGIPEGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTF
MQSLIKMYPEVKKPYRGQYILEGDIQTEDE

Nucleotide


Download         Length: 573 bp        

>NTDB_id=729425 N4Q31_RS06980 WP_024426871.1 1378624..1379196(+) (rok) [Bacillus safensis strain GX-H6]
TTGTTTAATGAGAGGGAAGCGTTACGTTTACGATTGGAACAATTAAACGAGGCAGAAGTAAAGGTCATCCGTGAATATCA
AATTGAGCGCGATGCGATTTATGCAAAATTAAGAGAATTAGACCGTCAAGGAACAGGTCTAGTGTCAGATACAAAAAAAG
AAGTACGTACAGAAAGAAAGACAGATTCACTGCCTGTATTAGCTGAGCTTGCTGCGCAAGAAATGAGAAGCTACCAGCAG
CCGGCACAACCACAATCATCATCTTTAGGAACAGGACAGCTAAACGGTGCACCTGTAGGTATTCCTGAAGGATCGACAAG
ACGCAGAAGAGGCACAGCTCGTCCTGGCTCAAAGGCAGCGAAGCTTCGTGAAGCTGCGATTAAAACGTTAAAACGTCATA
ATGCAGCGATTAAAAGCTCAGAGCTTCAAAAAGAGATCGAAAAAGAGAGCGGTCTTGAAATTCCAAATATGACAACGTTT
ATGCAAAGCTTAATTAAAATGTATCCTGAAGTGAAGAAGCCTTATCGCGGACAGTATATTTTAGAAGGCGACATTCAAAC
AGAAGACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

81.283

98.421

0.8