Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   N4Q31_RS06855 Genome accession   NZ_CP104391
Coordinates   1358828..1359289 (-) Length   153 a.a.
NCBI ID   WP_008356877.1    Uniprot ID   -
Organism   Bacillus safensis strain GX-H6     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1353828..1364289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4Q31_RS06830 (N4Q31_06830) - 1353870..1354361 (+) 492 Protein_1293 hypothetical protein -
  N4Q31_RS06835 (N4Q31_06835) - 1354439..1355017 (-) 579 WP_144495045.1 hypothetical protein -
  N4Q31_RS06840 (N4Q31_06840) - 1356130..1356291 (+) 162 Protein_1295 IS3 family transposase -
  N4Q31_RS06845 (N4Q31_06845) - 1356499..1357809 (+) 1311 WP_251180706.1 MFS transporter -
  N4Q31_RS06850 (N4Q31_06850) - 1357883..1358791 (+) 909 WP_024424709.1 chemotaxis protein -
  N4Q31_RS06855 (N4Q31_06855) kre 1358828..1359289 (-) 462 WP_008356877.1 YkyB family protein Regulator
  N4Q31_RS06860 (N4Q31_06860) - 1359524..1359700 (+) 177 WP_180272404.1 hypothetical protein -
  N4Q31_RS06865 (N4Q31_06865) - 1359793..1360710 (-) 918 WP_064498384.1 AraC family transcriptional regulator -
  N4Q31_RS06870 (N4Q31_06870) - 1360824..1361720 (+) 897 WP_064498385.1 DMT family transporter -
  N4Q31_RS06875 (N4Q31_06875) - 1361902..1362117 (-) 216 WP_039178134.1 hypothetical protein -
  N4Q31_RS06880 (N4Q31_06880) - 1362314..1363591 (-) 1278 WP_260775889.1 MFS transporter -
  N4Q31_RS06885 (N4Q31_06885) - 1363665..1364162 (-) 498 WP_260775890.1 L,D-transpeptidase family protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17711.30 Da        Isoelectric Point: 10.2452

>NTDB_id=729424 N4Q31_RS06855 WP_008356877.1 1358828..1359289(-) (kre) [Bacillus safensis strain GX-H6]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQILQTYVGLKEKPAATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=729424 N4Q31_RS06855 WP_008356877.1 1358828..1359289(-) (kre) [Bacillus safensis strain GX-H6]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAACCCCAAGTTTCTTTATCTTTTGAAAAAACGCGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAAGTATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCACCTGCCACCAACGAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCGAAAGCGAATATGTCATTAAACCGAGCAAAGCAAATACTTCAAACGTATGTCGGTTTAAAAGAAAAACCTGCCGCCA
CAAAACAAAAATCACATTACACAAAGCCCGTCTTCAAACGACTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

75.974

100

0.765