Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   FOY94_RS19825 Genome accession   NZ_AP019630
Coordinates   4119622..4121055 (+) Length   477 a.a.
NCBI ID   WP_047060252.1    Uniprot ID   -
Organism   Enterobacter asburiae strain 17Nkhm-UP2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4114622..4126055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOY94_RS19795 (EAS17NKHM_038120) - 4115189..4116166 (+) 978 WP_048981182.1 calcium/sodium antiporter -
  FOY94_RS19800 (EAS17NKHM_038130) kdsD 4116180..4117166 (+) 987 WP_032659705.1 arabinose-5-phosphate isomerase KdsD -
  FOY94_RS19805 (EAS17NKHM_038140) kdsC 4117181..4117747 (+) 567 WP_048981180.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  FOY94_RS19810 (EAS17NKHM_038150) lptC 4117744..4118319 (+) 576 WP_033146749.1 LPS export ABC transporter periplasmic protein LptC -
  FOY94_RS19815 (EAS17NKHM_038160) lptA 4118288..4118842 (+) 555 WP_033146750.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  FOY94_RS19820 (EAS17NKHM_038170) lptB 4118849..4119574 (+) 726 WP_033146751.1 LPS export ABC transporter ATP-binding protein -
  FOY94_RS19825 (EAS17NKHM_038180) rpoN/rpoN1 4119622..4121055 (+) 1434 WP_047060252.1 RNA polymerase factor sigma-54 Machinery gene
  FOY94_RS19830 (EAS17NKHM_038190) hpf 4121078..4121365 (+) 288 WP_008501444.1 ribosome hibernation promoting factor -
  FOY94_RS19835 (EAS17NKHM_038200) ptsN 4121448..4121939 (+) 492 WP_008501443.1 PTS IIA-like nitrogen regulatory protein PtsN -
  FOY94_RS19840 (EAS17NKHM_038210) rapZ 4121985..4122839 (+) 855 WP_014885397.1 RNase adapter RapZ -
  FOY94_RS19845 (EAS17NKHM_038220) npr 4122836..4123108 (+) 273 WP_003861872.1 PTS phosphocarrier protein NPr -
  FOY94_RS19850 (EAS17NKHM_038230) mtgA 4123148..4123873 (-) 726 WP_048981179.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  FOY94_RS19855 (EAS17NKHM_038240) elbB 4123936..4124589 (-) 654 WP_039260518.1 isoprenoid biosynthesis glyoxalase ElbB -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54197.95 Da        Isoelectric Point: 4.3173

>NTDB_id=72942 FOY94_RS19825 WP_047060252.1 4119622..4121055(+) (rpoN/rpoN1) [Enterobacter asburiae strain 17Nkhm-UP2]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEVDTQQSQDTEALDTADALEQKEMPD
ELPLDASWDEIYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLDD
ILESMGDEEIELEEIEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFSKETPWLDEARLIISDHLDLLANHDFRSLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNDRWVVELNSDSIPRLQINQQYASMCTSARNDSDNQYIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=72942 FOY94_RS19825 WP_047060252.1 4119622..4121055(+) (rpoN/rpoN1) [Enterobacter asburiae strain 17Nkhm-UP2]
ATGAAGCAAGGTTTGCAATTAAGGCTCAGCCAACAACTGGCAATGACGCCGCAGCTACAGCAGGCAATTCGCCTGTTGCA
ACTGTCCACGTTAGAACTTCAGCAGGAGCTCCAGCAGGCGCTGGACAGCAACCCCCTGCTGGAACAAACCGATCTTCATG
ACGAGGTAGATACTCAGCAGTCACAGGATACAGAAGCGCTCGACACCGCGGATGCACTCGAACAAAAAGAGATGCCCGAC
GAGCTTCCGCTGGATGCGAGCTGGGATGAAATCTACACCGCCGGAACCCCTTCCGGTACGCGTGCAGACTACCAGGATGA
TGAGCTACCGGTCTATCAGGGAGAAACCACCCAGTCGCTGCAGGATTACCTGATGTGGCAGGTGGAACTTACCCCCTTCT
CCGATACCGACCGCGCGATTGCCACCTCAATTGTCGATGCCGTTGACGACACCGGCTATTTGACCGTCACGCTGGACGAT
ATCCTGGAAAGCATGGGCGACGAAGAGATTGAACTTGAGGAGATCGAAGCCGTTCTGAAGCGCATCCAGCGTTTCGATCC
GGTAGGCGTGGCCGCAAAAGATCTGCGCGACTGCCTGCTGATCCAGCTTTCTCAGTTCAGCAAAGAGACGCCATGGCTCG
ACGAGGCGCGCTTAATCATCAGCGATCATCTGGATCTGTTGGCCAACCACGATTTCCGCAGCCTGATGCGCGTCACGCGC
CTGAAGGAAGAGGTGCTGAAAGAAGCGGTGAATCTGATCCAGTCACTCGATCCGCGCCCGGGACAGTCGATCCAGACCAG
CGAGCCCGAGTACGTCATCCCGGACGTGCTGGTGAGAAAACACAATGACCGCTGGGTCGTTGAACTGAATTCAGACAGCA
TCCCTCGCCTGCAAATCAACCAGCAGTATGCCTCCATGTGCACCAGCGCGCGTAACGACTCCGACAATCAATATATTCGT
AGCAATCTTCAGGAAGCGCGATGGCTGATCAAAAGTCTGGAGAGCCGAAATGATACGCTGCTGCGCGTCAGCCGCTGTAT
TGTCGAACAGCAGCAGGCGTTCTTTGAGCAGGGCGAAGAGTATATGAAACCGATGGTACTGGCGGATATCGCCCAGGCCG
TCGAGATGCATGAATCAACCATTTCCCGTGTCACCACGCAGAAGTATCTGCACAGTCCACGCGGTATATTTGAGCTTAAG
TATTTCTTCTCCAGCCATGTGAATACCGAGGGCGGCGGCGAAGCGTCGTCAACGGCCATTCGTGCCCTGGTGAAGAAGTT
GATCGCCGCGGAGAACCCCGCGAAGCCACTAAGCGACAGTAAGTTAACCACCATGCTGTCCGATCAGGGTATTATGGTGG
CACGTCGTACTGTTGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCCAACCAGCGTAAACAGCTGGTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.545

100

0.482

Multiple sequence alignment