Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   N4Q31_RS05230 Genome accession   NZ_CP104391
Coordinates   1048814..1049392 (+) Length   192 a.a.
NCBI ID   WP_039177625.1    Uniprot ID   A0AAX0Z522
Organism   Bacillus safensis strain GX-H6     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1043814..1054392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4Q31_RS05210 (N4Q31_05210) - 1044310..1045605 (-) 1296 Protein_968 globin-coupled sensor protein -
  N4Q31_RS05215 (N4Q31_05215) - 1045696..1047228 (-) 1533 WP_099663119.1 FAD-dependent oxidoreductase -
  N4Q31_RS05220 (N4Q31_05220) - 1047371..1048231 (+) 861 WP_024425480.1 SDR family oxidoreductase -
  N4Q31_RS05225 (N4Q31_05225) - 1048288..1048524 (-) 237 WP_008348804.1 IDEAL domain-containing protein -
  N4Q31_RS05230 (N4Q31_05230) comK 1048814..1049392 (+) 579 WP_039177625.1 competence protein ComK Regulator
  N4Q31_RS05235 (N4Q31_05235) - 1049715..1050197 (+) 483 WP_039177626.1 hypothetical protein -
  N4Q31_RS05240 (N4Q31_05240) - 1050228..1051667 (-) 1440 WP_260775711.1 PLP-dependent aminotransferase family protein -
  N4Q31_RS05245 (N4Q31_05245) - 1051813..1052982 (+) 1170 WP_260775713.1 MFS transporter -
  N4Q31_RS05250 (N4Q31_05250) - 1053048..1053326 (+) 279 WP_212040244.1 barstar family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22354.36 Da        Isoelectric Point: 8.7996

>NTDB_id=729413 N4Q31_RS05230 WP_039177625.1 1048814..1049392(+) (comK) [Bacillus safensis strain GX-H6]
MSGISETPLDSYVINQTTMAVLSVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVTFTNEQTIKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=729413 N4Q31_RS05230 WP_039177625.1 1048814..1049392(+) (comK) [Bacillus safensis strain GX-H6]
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTTCAGTTGAAGAAGG
AAAAAGAGTATATTCAAAAGTCATCGAAAGAGAGACAAGCTTTTATGTTGAATTAAAGCCCCTGCAAATTATTGAACGCA
GCTGCAGATTCTTCGGCTCAAGCTATGCAGGCAGAAAGGCGGGAACATACGAAGTAACAGGAATTTCTCACAAACCCCCA
ATTGTGATTGACTCATCCAACCATCTGTATTTCTTCCCAACCTATTCATCCAACCGTCCTCAGTGCGGCTGGATCTCCCA
CAAATACATTCATACCTTCCAGGAATCATCCCTCGGAGACACGGTGGTCACCTTTACAAATGAGCAAACCATCAAACTTG
ATGTCTCATATAAATCATTTGAGAGTCAGGTGCACCGAACAGCATATCTCCGAACGAAATTTCAAGATCGTCTTGATGGA
GGTCTTCCTAAGAAACAAGAATTTATGCTGTATCCAAAGGAACAACAGCTCAATCTCGTTTACGATTTTATATTAAGGGA
GCTTCGTAACAGATATTAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.458

100

0.615