Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   N4Q31_RS01950 Genome accession   NZ_CP104391
Coordinates   360559..360987 (-) Length   142 a.a.
NCBI ID   WP_126682176.1    Uniprot ID   -
Organism   Bacillus safensis strain GX-H6     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 355559..365987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4Q31_RS01920 (N4Q31_01920) - 355722..356051 (+) 330 WP_039182972.1 YckD family protein -
  N4Q31_RS01925 (N4Q31_01925) - 356094..356858 (-) 765 WP_058837296.1 MBL fold metallo-hydrolase -
  N4Q31_RS01930 (N4Q31_01930) - 356974..357390 (+) 417 WP_039176401.1 Lrp/AsnC family transcriptional regulator -
  N4Q31_RS01935 (N4Q31_01935) - 357419..358225 (+) 807 WP_064498645.1 aminoglycoside N(3)-acetyltransferase -
  N4Q31_RS01940 (N4Q31_01940) - 358227..358613 (-) 387 WP_064498646.1 competence protein ComJ -
  N4Q31_RS01945 (N4Q31_01945) - 358734..360431 (-) 1698 WP_247544613.1 methyl-accepting chemotaxis protein -
  N4Q31_RS01950 (N4Q31_01950) nucA/comI 360559..360987 (-) 429 WP_126682176.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  N4Q31_RS01955 (N4Q31_01955) - 361355..363424 (+) 2070 WP_251181430.1 hydantoinase/oxoprolinase family protein -
  N4Q31_RS01960 (N4Q31_01960) - 363414..365402 (+) 1989 WP_260775259.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15985.99 Da        Isoelectric Point: 6.2215

>NTDB_id=729407 N4Q31_RS01950 WP_126682176.1 360559..360987(-) (nucA/comI) [Bacillus safensis strain GX-H6]
MKLLKMILLLLLIVIGIATGYIQLEQGKQETANSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKHSDEQRDRS
LHGIPTKRGYDRDEWPMAMCKEGGSGASVKYVRPSDNRGAGSWVSHQLSDDPDGTRIQFIID

Nucleotide


Download         Length: 429 bp        

>NTDB_id=729407 N4Q31_RS01950 WP_126682176.1 360559..360987(-) (nucA/comI) [Bacillus safensis strain GX-H6]
ATGAAACTTCTTAAAATGATTCTCTTGCTTTTATTGATTGTCATTGGTATAGCAACAGGCTATATCCAACTGGAGCAAGG
AAAACAAGAGACAGCGAATTCATCTTATGACAAAACCATTCATTTTCCATCAGACCGCTATCCCGAAACAGCCAAGCACA
TAGAAGAAGCCATTGATGAAGGTCATTCGTCCATTTGTACAATTGACCGTAAACATAGTGATGAGCAGAGAGATCGATCA
CTACATGGCATTCCAACAAAGCGCGGGTATGATCGGGACGAATGGCCAATGGCGATGTGCAAAGAAGGAGGCAGTGGAGC
TTCTGTCAAATATGTACGCCCTTCTGATAATAGAGGCGCAGGCTCGTGGGTAAGTCATCAATTATCGGATGATCCTGACG
GCACAAGAATTCAATTTATCATCGATTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

65.789

80.282

0.528