Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   N4Q31_RS00595 Genome accession   NZ_CP104391
Coordinates   109457..110836 (+) Length   459 a.a.
NCBI ID   WP_025092231.1    Uniprot ID   A0AAP7QRW5
Organism   Bacillus safensis strain GX-H6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 104457..115836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4Q31_RS00575 (N4Q31_00575) - 104802..105266 (+) 465 WP_003217184.1 CtsR family transcriptional regulator -
  N4Q31_RS00580 (N4Q31_00580) - 105281..105838 (+) 558 WP_064497446.1 UvrB/UvrC motif-containing protein -
  N4Q31_RS00585 (N4Q31_00585) - 105843..106931 (+) 1089 WP_260775131.1 protein arginine kinase -
  N4Q31_RS00590 (N4Q31_00590) clpC 106928..109363 (+) 2436 WP_007496263.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  N4Q31_RS00595 (N4Q31_00595) radA 109457..110836 (+) 1380 WP_025092231.1 DNA repair protein RadA Machinery gene
  N4Q31_RS00600 (N4Q31_00600) disA 110839..111918 (+) 1080 WP_024425581.1 DNA integrity scanning diadenylate cyclase DisA -
  N4Q31_RS00605 (N4Q31_00605) - 112072..113172 (+) 1101 WP_047203808.1 PIN/TRAM domain-containing protein -
  N4Q31_RS00610 (N4Q31_00610) ispD 113186..113875 (+) 690 WP_034665643.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  N4Q31_RS00615 (N4Q31_00615) ispF 113879..114355 (+) 477 WP_003216928.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50009.49 Da        Isoelectric Point: 7.3829

>NTDB_id=729406 N4Q31_RS00595 WP_025092231.1 109457..110836(+) (radA) [Bacillus safensis strain GX-H6]
MAKTKSKFICQSCGYESAKWMGKCPGCGTWNSMTEEVVRKEPANRRSAFNHSVQTIQKPSPISAIETSEEPRIKTNLEEF
NRVLGSGIVKGSLVLIGGDPGIGKSTLLLQVSAQLSDKNQNVLYISGEESIKQTKLRADRLGIESASLHVLAETDMEYIT
SAIQEMKPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAQLMKIAKTNGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNELGIFEMREEGLTEVLNPSEIFLEERSAGVSGSCVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGLDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFKDAAPHQADCFIGEVGLT
GEVRRVSRIEQRVQEAAKLGFKRMFIPQANIDGWKKPRGIELVGVENVAEALRISLGGS

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=729406 N4Q31_RS00595 WP_025092231.1 109457..110836(+) (radA) [Bacillus safensis strain GX-H6]
ATGGCTAAGACAAAATCAAAATTTATATGCCAATCGTGCGGTTATGAGTCAGCCAAATGGATGGGGAAATGTCCAGGCTG
CGGCACGTGGAACAGTATGACAGAAGAGGTCGTTCGCAAAGAGCCGGCAAACCGTCGTAGTGCTTTTAATCATTCTGTTC
AAACCATTCAAAAACCTTCACCTATATCTGCAATTGAAACATCCGAAGAACCCCGAATTAAAACGAATTTAGAAGAATTT
AACCGAGTATTAGGAAGTGGAATTGTCAAAGGCTCTCTTGTTCTTATTGGCGGAGACCCTGGGATTGGGAAGTCCACATT
ATTATTACAAGTATCAGCACAGCTTTCAGATAAAAATCAGAATGTGTTGTACATATCTGGTGAGGAGTCCATTAAACAAA
CGAAGCTAAGAGCGGACCGCCTTGGCATTGAAAGCGCCTCTTTACATGTTTTGGCTGAAACCGATATGGAGTATATAACG
TCTGCTATACAGGAGATGAAACCGGCTTTTGTTGTGGTGGATTCGATTCAAACCGTTTATCAAAGCGATATCACTTCAGC
TCCCGGCTCTGTATCTCAAGTAAGAGAATGTACAGCACAGCTGATGAAAATTGCCAAGACAAATGGGATTCCTATTTTTA
TCGTTGGTCACGTGACCAAAGAAGGCTCGATCGCAGGTCCACGCCTTTTAGAGCATATGGTGGACACGGTTCTTTATTTT
GAAGGTGAACGTCATCATACATTTCGTATCTTACGGGCGGTCAAAAACCGATTTGGTTCAACGAATGAATTGGGGATTTT
TGAAATGAGAGAGGAAGGACTCACGGAAGTATTAAACCCATCAGAAATCTTTTTAGAAGAGCGGTCGGCAGGTGTATCTG
GTTCGTGTGTTGTTGCCTCAATGGAAGGAACAAGACCCGTACTTGTCGAGATACAGGCATTAATTTCCCCGACAAGCTTT
GGGAATCCGCGAAGAATGGCCACTGGCCTTGATCATAATCGAGTATCGCTGCTCATGGCAGTTTTAGAAAAACGCGTGGG
GCTGCTCTTGCAAAACCAAGATGCGTATTTAAAGGTCGCAGGCGGTGTGAAGCTTGACGAACCGGCGATTGACTTAGCTA
TTGCCGTCAGTATTGCATCAAGCTTTAAAGACGCAGCGCCGCATCAAGCGGATTGCTTTATAGGAGAGGTCGGTCTGACG
GGAGAAGTCAGAAGAGTATCAAGAATTGAACAGCGAGTGCAGGAAGCTGCGAAACTAGGATTTAAGCGAATGTTTATTCC
TCAGGCGAATATAGACGGATGGAAAAAGCCGAGAGGGATTGAGTTAGTTGGTGTAGAAAATGTAGCGGAGGCACTTCGAA
TTTCACTAGGGGGATCATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-222)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

87.336

99.782

0.871
  radA Streptococcus mitis NCTC 12261

61.589

98.693

0.608
  radA Streptococcus pneumoniae Rx1

61.589

98.693

0.608
  radA Streptococcus pneumoniae D39

61.589

98.693

0.608
  radA Streptococcus pneumoniae R6

61.589

98.693

0.608
  radA Streptococcus pneumoniae TIGR4

61.589

98.693

0.608
  radA Streptococcus mitis SK321

61.589

98.693

0.608