Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   N4Q31_RS00255 Genome accession   NZ_CP104391
Coordinates   47269..47559 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus safensis strain GX-H6     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 42269..52559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4Q31_RS00215 (N4Q31_00215) - 42301..42630 (+) 330 WP_024425625.1 cyclic-di-AMP receptor -
  N4Q31_RS00220 (N4Q31_00220) - 42643..43083 (+) 441 WP_039175878.1 YaaR family protein -
  N4Q31_RS00225 (N4Q31_00225) holB 43095..44084 (+) 990 WP_024427206.1 DNA polymerase III subunit delta' -
  N4Q31_RS00230 (N4Q31_00230) - 44087..44914 (+) 828 WP_024425628.1 stage 0 sporulation family protein -
  N4Q31_RS00235 (N4Q31_00235) yabA 44929..45282 (+) 354 WP_039175883.1 DNA replication initiation control protein YabA -
  N4Q31_RS00240 (N4Q31_00240) - 45338..46081 (+) 744 WP_126681986.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  N4Q31_RS00245 (N4Q31_00245) - 46068..46367 (+) 300 WP_039175889.1 GIY-YIG nuclease family protein -
  N4Q31_RS00250 (N4Q31_00250) rsmI 46342..47223 (+) 882 WP_126681985.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  N4Q31_RS00255 (N4Q31_00255) abrB 47269..47559 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  N4Q31_RS00260 (N4Q31_00260) metG 48080..50080 (+) 2001 WP_058838217.1 methionine--tRNA ligase -
  N4Q31_RS00265 (N4Q31_00265) - 50162..50929 (+) 768 WP_260775101.1 TatD family hydrolase -
  N4Q31_RS00270 (N4Q31_00270) - 51174..52376 (+) 1203 WP_260775102.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=729404 N4Q31_RS00255 WP_087975202.1 47269..47559(-) (abrB) [Bacillus safensis strain GX-H6]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=729404 N4Q31_RS00255 WP_087975202.1 47269..47559(-) (abrB) [Bacillus safensis strain GX-H6]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAACTTCGCCGTAC
GCTAGGAATTGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938