Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   N4P52_RS12940 Genome accession   NZ_CP104390
Coordinates   2681905..2682720 (-) Length   271 a.a.
NCBI ID   WP_014097358.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain JBI-YZ6.3     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 2676905..2687720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4P52_RS12920 (N4P52_12920) - 2678036..2678194 (-) 159 WP_014097362.1 small, acid-soluble spore protein K -
  N4P52_RS12925 (N4P52_12925) - 2678281..2679261 (-) 981 WP_014097361.1 metal-dependent hydrolase -
  N4P52_RS12930 (N4P52_12930) mutY 2679440..2680558 (+) 1119 WP_026684724.1 A/G-specific adenine glycosylase -
  N4P52_RS12935 (N4P52_12935) - 2681607..2681924 (-) 318 WP_035183866.1 YfhH family protein -
  N4P52_RS12940 (N4P52_12940) recX 2681905..2682720 (-) 816 WP_014097358.1 recombination regulator RecX Regulator
  N4P52_RS12945 (N4P52_12945) - 2682807..2682929 (+) 123 WP_014097357.1 YfhE family protein -
  N4P52_RS12950 (N4P52_12950) - 2683076..2683258 (+) 183 WP_014097356.1 YfhD family protein -
  N4P52_RS12955 (N4P52_12955) trpA 2683517..2684308 (-) 792 WP_014097355.1 tryptophan synthase subunit alpha -
  N4P52_RS12960 (N4P52_12960) - 2684301..2684705 (-) 405 WP_035183857.1 hypothetical protein -
  N4P52_RS12965 (N4P52_12965) trpB 2684698..2685903 (-) 1206 WP_017551421.1 tryptophan synthase subunit beta -
  N4P52_RS12970 (N4P52_12970) trpCF 2685881..2687305 (-) 1425 WP_035190606.1 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF -

Sequence

Protein


Download         Length: 271 a.a.        Molecular weight: 31496.19 Da        Isoelectric Point: 7.5094

>NTDB_id=729394 N4P52_RS12940 WP_014097358.1 2681905..2682720(-) (recX) [Heyndrickxia coagulans strain JBI-YZ6.3]
MPVITKISVQKNNKERYNIFLDGQYRFSVDEEVLARYQLLKGKELDELDIEAILAEDDIRKGVNTAIHFLSYRMRSEKEV
RDDLIKKEFAPEVIRSVISKLYELQYLDDAEFAASFVRTQMNTTHKGPVVIRRELQQKGIAPELVKKALEIFDADQQVEH
ALALAEKLSRQHARLSEKLLKQKVEQGLVVKGYPPEVISAAMAALHIEKDEEAEWEALLQHAEKAKRKYGRLSGYAYRQK
MKQFLYRKGFPVDLIDRYLREEEDGDGKKIQ

Nucleotide


Download         Length: 816 bp        

>NTDB_id=729394 N4P52_RS12940 WP_014097358.1 2681905..2682720(-) (recX) [Heyndrickxia coagulans strain JBI-YZ6.3]
GTGCCGGTCATTACAAAAATCTCAGTTCAAAAAAATAATAAAGAACGATACAATATTTTTCTTGACGGCCAGTACCGATT
CAGTGTTGATGAAGAAGTGCTGGCACGGTACCAGCTTTTAAAGGGGAAAGAATTGGATGAGCTTGATATTGAAGCAATCC
TTGCCGAAGATGATATCCGGAAAGGCGTCAACACCGCTATCCATTTTCTTTCCTACCGGATGCGGTCGGAAAAAGAAGTA
CGTGATGATTTGATAAAAAAGGAATTTGCGCCGGAAGTCATCCGGAGTGTCATATCAAAGCTTTATGAATTGCAGTATTT
GGATGATGCGGAATTTGCCGCAAGTTTTGTACGAACACAAATGAATACAACACATAAAGGGCCTGTTGTCATTAGAAGGG
AACTCCAGCAAAAAGGCATTGCACCAGAGCTTGTGAAAAAGGCGCTTGAAATTTTTGATGCGGATCAGCAAGTGGAACAC
GCCCTTGCCCTTGCGGAAAAACTGTCCAGGCAGCATGCCCGGTTGTCAGAGAAGCTTTTAAAGCAAAAAGTGGAGCAGGG
GCTTGTCGTAAAAGGTTATCCACCTGAAGTGATTTCCGCTGCGATGGCGGCGCTTCATATTGAAAAGGATGAAGAAGCGG
AGTGGGAAGCCCTTCTTCAGCACGCTGAAAAAGCAAAGCGCAAATACGGTAGACTTTCGGGATATGCATACAGGCAAAAA
ATGAAGCAGTTTTTATACCGGAAAGGGTTCCCGGTTGATTTAATAGACCGCTACTTGCGAGAAGAGGAGGATGGAGATGG
AAAAAAGATACAGTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

52.471

97.048

0.509