Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   N4P52_RS09340 Genome accession   NZ_CP104390
Coordinates   1968802..1969926 (-) Length   374 a.a.
NCBI ID   WP_014098021.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain JBI-YZ6.3     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1963802..1974926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4P52_RS09295 (N4P52_09295) - 1964369..1965160 (+) 792 WP_014098030.1 YqhG family protein -
  N4P52_RS09300 (N4P52_09300) - 1965193..1965369 (-) 177 WP_014098029.1 YqzE family protein -
  N4P52_RS09305 (N4P52_09305) - 1965356..1965913 (-) 558 WP_014098028.1 shikimate kinase -
  N4P52_RS09310 (N4P52_09310) comGG 1965910..1966278 (-) 369 WP_014098027.1 competence type IV pilus minor pilin ComGG -
  N4P52_RS09315 (N4P52_09315) comGF 1966275..1966760 (-) 486 WP_035184588.1 competence type IV pilus minor pilin ComGF -
  N4P52_RS09320 (N4P52_09320) - 1966723..1967031 (-) 309 WP_046720742.1 type II secretion system protein -
  N4P52_RS09325 (N4P52_09325) comGD 1967018..1967461 (-) 444 WP_014098024.1 competence type IV pilus minor pilin ComGD -
  N4P52_RS09330 (N4P52_09330) comGC 1967458..1967769 (-) 312 WP_014098023.1 competence type IV pilus major pilin ComGC -
  N4P52_RS09335 (N4P52_09335) comGB 1967838..1968902 (-) 1065 WP_230090458.1 competence type IV pilus assembly protein ComGB -
  N4P52_RS09340 (N4P52_09340) comGA 1968802..1969926 (-) 1125 WP_014098021.1 competence type IV pilus ATPase ComGA Machinery gene
  N4P52_RS09345 (N4P52_09345) - 1970121..1970828 (+) 708 WP_014098020.1 metalloregulator ArsR/SmtB family transcription factor -
  N4P52_RS09350 (N4P52_09350) - 1970906..1971148 (+) 243 WP_014098019.1 DUF2626 domain-containing protein -
  N4P52_RS09355 (N4P52_09355) - 1971217..1971846 (-) 630 WP_014098018.1 MBL fold metallo-hydrolase -
  N4P52_RS09360 (N4P52_09360) - 1971976..1972149 (+) 174 WP_014098017.1 DUF2759 domain-containing protein -
  N4P52_RS09365 (N4P52_09365) - 1972454..1973422 (-) 969 WP_014098016.1 ROK family glucokinase -
  N4P52_RS09370 (N4P52_09370) - 1973415..1973636 (-) 222 WP_013859652.1 YqgQ family protein -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 42374.92 Da        Isoelectric Point: 9.5494

>NTDB_id=729382 N4P52_RS09340 WP_014098021.1 1968802..1969926(-) (comGA) [Heyndrickxia coagulans strain JBI-YZ6.3]
MSVEKIAELLIGQAVKNNVTDVHIVPKEKHYHVQFRQYGRLYPHRNLSAKAGERLISHLKFMSSMDISEKRKPQSGSFAM
NVLQQTISLRISTLPTSLSKESLVIRILPHEEKFQLSQISLFPSSTKKLMALLNHSHGMLIFSGPTGSGKSTTMYTLVEH
CAKRFLRNVITLEDPVEKQSDSFLQVQVNEKAGITYSTGLKAILRHDPDIILVGEIRDAETARIAIRASLTGHLVLTTLH
TRDAKGAIYRLMEFGVSIHEMEQTLLAVSAQRLITLRCPVCGGIRCPHDSQDCPRSREKRQTAVYELLYGKNLQRVLKEA
KGEQVYYHYPTLKEWLRKGIVLGYISEEEYHRWIAEEEEADKPQTAGALSYPGR

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=729382 N4P52_RS09340 WP_014098021.1 1968802..1969926(-) (comGA) [Heyndrickxia coagulans strain JBI-YZ6.3]
ATGTCAGTTGAAAAAATTGCGGAACTTTTGATCGGACAGGCGGTAAAAAACAATGTGACCGATGTCCATATCGTTCCGAA
AGAAAAGCATTACCATGTCCAGTTCCGGCAGTACGGAAGGCTGTACCCCCACCGCAACCTTTCCGCGAAAGCCGGGGAAA
GGCTGATATCCCATTTGAAATTTATGTCTTCCATGGATATCAGTGAAAAACGGAAACCCCAAAGCGGGTCGTTCGCCATG
AATGTTTTGCAGCAGACGATCTCCTTAAGAATTTCGACGCTGCCAACCTCTCTTTCCAAAGAGAGCCTCGTTATTCGGAT
CTTGCCCCATGAAGAAAAATTCCAGCTCAGCCAAATTTCACTTTTTCCATCGAGCACAAAAAAATTAATGGCGCTGCTCA
ACCATTCGCATGGGATGCTGATTTTCAGCGGCCCGACTGGAAGCGGCAAGTCTACGACGATGTATACGCTTGTTGAGCAC
TGCGCAAAACGGTTTTTACGGAATGTGATTACACTGGAAGACCCTGTTGAAAAACAAAGCGACTCGTTTTTGCAGGTACA
GGTGAATGAAAAAGCAGGTATTACTTACAGCACAGGGCTGAAAGCGATTTTGCGCCATGATCCGGATATTATCCTGGTGG
GGGAAATCCGTGATGCCGAAACAGCAAGAATTGCGATCCGCGCATCACTCACCGGCCATCTCGTGCTGACGACATTGCAT
ACGCGTGACGCAAAGGGCGCGATTTACAGGCTGATGGAATTTGGGGTGAGCATCCACGAAATGGAGCAGACTTTGCTCGC
AGTCAGCGCACAGCGGCTGATTACATTGCGATGCCCGGTATGCGGTGGGATCCGCTGTCCGCATGATTCGCAAGATTGCC
CACGCAGCCGAGAAAAGCGGCAAACCGCGGTATATGAGCTGCTGTACGGGAAAAATTTGCAGCGAGTGCTGAAAGAAGCA
AAGGGGGAACAGGTCTACTATCATTATCCGACACTGAAAGAATGGCTCAGAAAGGGGATTGTGCTTGGATACATTTCTGA
AGAAGAGTATCACCGCTGGATTGCCGAAGAGGAAGAAGCGGATAAGCCTCAAACTGCAGGGGCGCTTTCTTACCCGGGTC
GGTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

54.469

95.722

0.521