Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   N4P52_RS09090 Genome accession   NZ_CP104390
Coordinates   1924677..1926380 (-) Length   567 a.a.
NCBI ID   WP_035187999.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain JBI-YZ6.3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1919677..1931380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4P52_RS09070 (N4P52_09070) - 1921149..1921391 (+) 243 WP_061565219.1 DUF2627 domain-containing protein -
  N4P52_RS09075 (N4P52_09075) - 1921401..1922144 (-) 744 WP_061565220.1 glycerophosphodiester phosphodiesterase -
  N4P52_RS09080 (N4P52_09080) spo0A 1922263..1923048 (-) 786 WP_061565221.1 sporulation transcription factor Spo0A -
  N4P52_RS09085 (N4P52_09085) spoIVB 1923215..1924498 (-) 1284 WP_061565222.1 SpoIVB peptidase -
  N4P52_RS09090 (N4P52_09090) recN 1924677..1926380 (-) 1704 WP_035187999.1 DNA repair protein RecN Machinery gene
  N4P52_RS09095 (N4P52_09095) argR 1926398..1926847 (-) 450 WP_035187997.1 transcriptional regulator ArgR -
  N4P52_RS09100 (N4P52_09100) - 1927018..1927842 (-) 825 WP_014098067.1 TlyA family RNA methyltransferase -
  N4P52_RS09105 (N4P52_09105) dxs 1927843..1929744 (-) 1902 WP_260831891.1 1-deoxy-D-xylulose-5-phosphate synthase -
  N4P52_RS09110 (N4P52_09110) - 1929893..1930762 (-) 870 WP_017550507.1 polyprenyl synthetase family protein -
  N4P52_RS09115 (N4P52_09115) - 1930765..1930992 (-) 228 WP_013859605.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 64468.36 Da        Isoelectric Point: 4.8928

>NTDB_id=729381 N4P52_RS09090 WP_035187999.1 1924677..1926380(-) (recN) [Heyndrickxia coagulans strain JBI-YZ6.3]
MLQELSIKNFAIIDALTLSFEAGLTVLTGETGAGKSIIIDAIQLLTGGRGSSEFVRHGENRAEIEGLFLVEDGHPCMERA
REFGIEIEEGMVILRRDISKTGKSVCRINGKLVTISVLREIGSTLIDIHSQHETQELLNETYHLPLLDQYGQSEIETALL
DYEKLYKKYEAVYGRLKRMNENDQQLAQRLDLIQFQHEEIQNAGLRLHEDEELAEEKRKLVNFERLFESLNTGYEALAGE
QHGLDWLSLAMSHLETAAEVDGGLSDILESVQSCFYTLEDMSRSIRSRLDGLEFDPERLNVIEARLNEINQLKRKYGSTI
EEILEYGSKIEEEIESIVNRDHHVELLQKELQTVKRDLYLEAKQLSDLRKKWAGKLTENIHSELKQLYMDKTKFEVRFLA
TADDYYEADDIPFRRDGLDQVEFYISTNPGEPLKPLAKTASGGELSRIMLALKTIFSRHQGITSVIFDEVDTGVSGRVAQ
AIAEKIYHISVHSQVLCITHLPQVAAMADTHLLIMKETEKGRTRTKVKPLGQEEKIKEIGRMISGVEMTELTRQHAKELL
ELAEAIK

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=729381 N4P52_RS09090 WP_035187999.1 1924677..1926380(-) (recN) [Heyndrickxia coagulans strain JBI-YZ6.3]
TTGCTGCAGGAATTATCGATTAAAAATTTTGCCATTATTGATGCGCTAACCCTCTCATTTGAAGCCGGGCTGACTGTCCT
GACAGGGGAGACCGGTGCCGGCAAATCGATTATTATCGATGCGATCCAGCTTTTAACAGGCGGGAGAGGGTCATCGGAGT
TTGTCCGGCACGGGGAAAACCGTGCTGAGATTGAGGGTTTATTTCTGGTCGAAGACGGCCATCCGTGTATGGAGCGCGCC
CGCGAATTCGGCATTGAGATTGAGGAAGGCATGGTGATTTTGCGGCGCGATATATCGAAAACAGGGAAAAGCGTCTGCCG
CATCAACGGAAAACTTGTGACGATTTCGGTGCTGCGCGAAATCGGGTCGACTTTAATTGATATCCACAGCCAGCACGAAA
CGCAGGAACTGCTGAACGAAACGTACCATCTGCCGCTGCTTGACCAGTACGGGCAAAGCGAGATCGAAACGGCCCTCCTT
GATTACGAAAAATTATATAAAAAATACGAAGCCGTTTACGGGCGGTTAAAAAGAATGAATGAAAACGACCAGCAGCTTGC
CCAGCGCCTTGACCTCATCCAGTTCCAGCATGAGGAAATCCAAAACGCAGGGCTGAGGCTGCATGAAGACGAGGAATTAG
CGGAAGAAAAACGAAAACTCGTCAATTTTGAACGGCTGTTTGAATCATTGAACACGGGGTATGAAGCGCTTGCCGGGGAA
CAGCACGGCCTCGACTGGCTCAGCCTTGCCATGAGCCATCTTGAAACCGCGGCCGAAGTGGATGGCGGGCTCTCTGACAT
TTTGGAATCCGTCCAAAGTTGTTTTTATACGCTCGAAGACATGTCCCGCTCGATCCGTTCCCGGCTTGACGGGCTTGAAT
TTGACCCGGAACGGCTTAACGTGATTGAAGCGCGGCTGAATGAGATTAACCAGTTAAAACGAAAATACGGCAGCACGATC
GAAGAAATTCTGGAATACGGGTCCAAAATTGAAGAAGAAATTGAATCGATCGTAAACCGCGACCATCATGTAGAGCTTTT
GCAAAAAGAACTGCAGACGGTAAAACGCGATCTTTATTTGGAAGCCAAGCAGCTCAGCGATTTGCGCAAAAAATGGGCGG
GAAAGCTGACTGAAAATATCCATTCCGAATTAAAGCAGCTGTATATGGATAAAACAAAGTTTGAAGTCCGTTTTCTTGCC
ACTGCTGATGATTATTATGAGGCGGATGACATTCCGTTCCGGCGCGACGGGCTCGATCAGGTTGAATTTTACATTTCCAC
CAACCCGGGCGAACCGCTAAAACCGCTCGCAAAAACTGCTTCAGGCGGGGAATTGTCGCGGATTATGCTGGCATTAAAAA
CGATTTTTTCCCGGCACCAGGGGATCACTTCCGTCATTTTCGACGAAGTGGATACCGGCGTAAGCGGCCGCGTAGCACAG
GCGATTGCGGAAAAAATTTACCATATCTCGGTCCATTCGCAAGTCCTTTGCATTACCCATCTGCCGCAGGTTGCCGCCAT
GGCGGACACGCATCTGCTGATCATGAAAGAAACCGAAAAGGGGAGAACGCGGACAAAAGTCAAGCCTTTGGGGCAGGAAG
AAAAAATTAAAGAAATCGGCCGCATGATTTCAGGCGTCGAAATGACAGAGCTGACAAGACAGCATGCGAAAGAGCTTCTC
GAACTGGCCGAAGCGATAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.686

100

0.603