Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   N4P52_RS04240 Genome accession   NZ_CP104390
Coordinates   944130..945080 (+) Length   316 a.a.
NCBI ID   WP_035182202.1    Uniprot ID   A0AAN0T8M8
Organism   Heyndrickxia coagulans strain JBI-YZ6.3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 939130..950080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4P52_RS04225 (N4P52_04225) - 939987..941423 (+) 1437 WP_260832457.1 S41 family peptidase -
  N4P52_RS04230 (N4P52_04230) - 941673..941882 (+) 210 WP_046721397.1 hypothetical protein -
  N4P52_RS04235 (N4P52_04235) - 942630..943817 (+) 1188 WP_035189101.1 PDZ domain-containing protein -
  N4P52_RS04240 (N4P52_04240) ceuB 944130..945080 (+) 951 WP_035182202.1 ABC transporter permease Machinery gene
  N4P52_RS04245 (N4P52_04245) - 945073..946023 (+) 951 WP_035182199.1 iron chelate uptake ABC transporter family permease subunit -
  N4P52_RS04250 (N4P52_04250) - 946017..946775 (+) 759 WP_026684167.1 ABC transporter ATP-binding protein -
  N4P52_RS04255 (N4P52_04255) - 946790..947728 (+) 939 WP_026104641.1 siderophore ABC transporter substrate-binding protein -
  N4P52_RS04260 (N4P52_04260) - 947785..948021 (-) 237 WP_026104642.1 4Fe-4S binding protein -
  N4P52_RS04265 (N4P52_04265) - 948328..948630 (+) 303 WP_014095855.1 DUF5316 domain-containing protein -
  N4P52_RS04270 (N4P52_04270) - 948741..949433 (+) 693 WP_061577191.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34408.52 Da        Isoelectric Point: 10.0424

>NTDB_id=729362 N4P52_RS04240 WP_035182202.1 944130..945080(+) (ceuB) [Heyndrickxia coagulans strain JBI-YZ6.3]
MKKRYLVPLLAVLSIISIFIGAENIRPADMLHLSREQTEILLASRLPRLISIIIAGMGMSICGLVMQQLTRNKFVSPTTA
GTMDCARLGILVAIILFSAASPLIKIAVAFCFALAGTLLFMKILGRIKWNDTIFIPLVGLMFGNIVSSVSTFFAYKFDLI
QSLSSWLQGDFSGVLKGKYEMLYLAVPAVLVAYVFANRFTVAGMGEDFAKNLGLNYKQVVNIGLALVALITSATVLTVGT
IPFLGLIIPNIVSIYRGDHMKKSITVTALLGAVFLLFCDILGRLVIYPYEVPISLTAGIIGSGIFVYLLLRRHAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=729362 N4P52_RS04240 WP_035182202.1 944130..945080(+) (ceuB) [Heyndrickxia coagulans strain JBI-YZ6.3]
ATGAAAAAAAGATATTTAGTGCCCCTGCTTGCCGTCCTGTCCATCATTTCAATTTTCATCGGCGCAGAAAATATCAGACC
GGCGGATATGCTCCATTTAAGCAGGGAGCAGACGGAAATTTTGCTGGCAAGCCGCCTGCCGCGTCTGATCAGCATCATCA
TTGCAGGCATGGGCATGAGCATCTGCGGCCTTGTGATGCAGCAGTTGACGAGAAATAAATTTGTCTCCCCGACGACAGCC
GGCACGATGGACTGTGCCCGGCTCGGCATTTTGGTTGCGATCATTCTGTTTTCGGCGGCAAGCCCGCTGATCAAAATTGC
GGTTGCTTTTTGCTTTGCACTGGCTGGCACCTTGCTGTTCATGAAAATACTGGGCCGGATTAAATGGAACGATACAATTT
TCATCCCGCTTGTCGGGCTGATGTTTGGCAATATCGTAAGCTCTGTATCGACTTTCTTTGCGTATAAATTCGATTTAATC
CAGAGCCTGTCCTCATGGCTGCAAGGCGATTTTTCAGGCGTGCTGAAAGGGAAGTACGAGATGCTTTATTTAGCAGTTCC
CGCCGTTTTGGTCGCGTATGTGTTCGCAAACCGGTTTACGGTCGCCGGCATGGGGGAAGATTTTGCCAAAAACCTTGGCC
TGAATTACAAGCAGGTGGTCAATATCGGCCTTGCCCTTGTCGCGCTGATTACTTCGGCAACTGTACTGACAGTCGGCACC
ATCCCGTTTCTGGGCTTAATTATTCCAAATATTGTGTCCATTTACCGCGGCGACCATATGAAAAAAAGCATTACGGTGAC
GGCGCTGCTTGGGGCAGTGTTCCTGCTATTTTGCGATATTTTGGGGCGCCTTGTCATTTATCCATATGAAGTGCCGATCA
GTTTAACAGCCGGCATCATCGGGAGTGGCATTTTTGTATATTTGCTGCTGAGGAGACACGCTTATGCATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.077

99.051

0.516