Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   N4G38_RS09640 Genome accession   NZ_CP104386
Coordinates   2080666..2082030 (-) Length   454 a.a.
NCBI ID   WP_023263825.1    Uniprot ID   V2J1S7
Organism   Cupriavidus gilardii strain WM02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2075666..2087030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4G38_RS09625 (N4G38_09625) - 2077466..2079307 (-) 1842 WP_198751683.1 ABC transporter ATP-binding protein -
  N4G38_RS09630 (N4G38_09630) - 2079353..2079838 (-) 486 WP_198751681.1 disulfide bond formation protein B -
  N4G38_RS09635 (N4G38_09635) - 2080158..2080604 (+) 447 WP_315904144.1 hypothetical protein -
  N4G38_RS09640 (N4G38_09640) radA 2080666..2082030 (-) 1365 WP_023263825.1 DNA repair protein RadA Machinery gene
  N4G38_RS09645 (N4G38_09645) alr 2082084..2083217 (-) 1134 WP_053821642.1 alanine racemase -
  N4G38_RS09650 (N4G38_09650) lplT 2083735..2085054 (+) 1320 WP_053821641.1 lysophospholipid transporter LplT -
  N4G38_RS09655 (N4G38_09655) - 2085180..2086370 (-) 1191 WP_260730318.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48514.66 Da        Isoelectric Point: 6.9987

>NTDB_id=729297 N4G38_RS09640 WP_023263825.1 2080666..2082030(-) (radA) [Cupriavidus gilardii strain WM02]
MAKTKTVYTCTECGGSVPRWQGQCPHCQQWNTLVESVPETPSARRFQPLAASSTVQRLSEIEASDVPRFTSGIEEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQALANLAASRRVLYVSGEESGAQIALRAQRLGIDSPSLGLLPEIQLEKIQATLDA
DKPEVAVIDSIQTLYSEALTSAPGSVAQVRECAAQLTRIAKSSGTTIILVGHVTKEGSLAGPRVLEHIVDTVLYFEGDTH
SSHRLIRAFKNRFGAVNELGVFAMTERGLRGISNPSALFLSQHEQTVSGSCVMVTQEGSRPLLVEIQALVDAAHVPNPRR
LAVGLEQNRLALLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLSIHSSMRNKPLPRGLVVFGEVGLAGEIRP
SPRGQDRLREAAKLGFTQAVIPKANAPKQPIDGLEVIAVERIEQAIERVRYLDG

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=729297 N4G38_RS09640 WP_023263825.1 2080666..2082030(-) (radA) [Cupriavidus gilardii strain WM02]
TTGGCAAAGACCAAGACCGTTTACACCTGTACCGAATGCGGCGGCTCCGTGCCGCGCTGGCAGGGGCAGTGCCCGCATTG
CCAGCAATGGAACACGCTGGTCGAGAGCGTGCCCGAGACGCCGTCGGCGCGGCGCTTCCAGCCGCTGGCAGCCTCGAGCA
CGGTGCAGCGGCTGTCGGAAATCGAGGCGTCCGACGTGCCGCGCTTTACCAGCGGCATCGAGGAATTCGACCGGGTGCTC
GGCGGCGGGCTGGTCGCCGGCGGCGTGGTGCTGATCGGCGGCGACCCCGGCATCGGCAAGTCCACGCTGCTGCTGCAGGC
GCTGGCGAATCTGGCGGCCAGCCGACGCGTGCTCTATGTCAGCGGCGAGGAGTCGGGCGCGCAGATCGCGCTGCGCGCGC
AGCGGCTCGGCATCGACAGTCCGAGCCTGGGGCTGCTGCCCGAGATCCAGCTCGAGAAGATCCAGGCGACACTGGACGCC
GACAAGCCCGAGGTCGCGGTGATCGACTCGATCCAGACGCTGTACTCGGAGGCGCTGACATCGGCGCCGGGCTCGGTGGC
ACAGGTGCGCGAATGCGCGGCGCAGCTGACGCGGATCGCCAAGAGCAGCGGCACCACCATCATCCTGGTCGGCCATGTGA
CCAAGGAAGGCAGCCTGGCCGGGCCGCGCGTGCTCGAGCATATCGTCGACACGGTGCTGTATTTCGAGGGCGACACGCAT
TCGTCGCACCGGCTGATCCGGGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAGCTGGGCGTGTTCGCGATGACCGAGCG
CGGCCTGCGCGGCATCAGCAATCCGTCGGCGCTGTTCCTGTCGCAGCATGAGCAGACCGTGTCCGGGTCCTGCGTGATGG
TCACGCAGGAGGGCTCGCGCCCGCTGCTGGTCGAGATCCAGGCGCTGGTCGATGCGGCGCACGTGCCGAATCCGCGCCGC
CTGGCGGTGGGCCTGGAGCAGAACCGGCTGGCGCTGCTGCTGGCCGTGCTGCACCGCCACGCCGGCATCGCCTGCTTCGA
CCAGGACGTGTTCCTCAATGCGGTGGGCGGGGTCAAGATCACCGAACCGGCCGCCGACCTGGCGGTGCTGCTGTCGATCC
ATTCGTCGATGCGCAACAAGCCCTTGCCGCGCGGACTGGTGGTATTCGGCGAGGTGGGGCTGGCCGGCGAGATCCGCCCA
AGCCCGCGCGGCCAGGACCGGCTGCGCGAGGCCGCCAAGCTGGGCTTTACGCAGGCGGTGATCCCGAAGGCCAATGCGCC
GAAGCAGCCGATCGACGGGCTCGAGGTGATCGCCGTCGAGCGAATCGAGCAGGCGATCGAGCGGGTGCGCTACCTCGACG
GCTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(59-217)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V2J1S7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.877

100

0.511
  radA Streptococcus pneumoniae Rx1

45.934

100

0.46
  radA Streptococcus pneumoniae D39

45.934

100

0.46
  radA Streptococcus pneumoniae R6

45.934

100

0.46
  radA Streptococcus pneumoniae TIGR4

45.934

100

0.46
  radA Streptococcus mitis SK321

46.12

99.339

0.458
  radA Streptococcus mitis NCTC 12261

45.898

99.339

0.456