Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KIG00_RS14270 Genome accession   NZ_CP104384
Coordinates   2909771..2910400 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain JNQH498     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2904771..2915400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIG00_RS14255 (KIG00_14255) helD 2905013..2907067 (-) 2055 WP_001295354.1 DNA helicase IV -
  KIG00_RS14260 (KIG00_14260) yccF 2907190..2907636 (+) 447 WP_001261235.1 YccF domain-containing protein -
  KIG00_RS14265 (KIG00_14265) yccS 2907646..2909808 (+) 2163 WP_000875061.1 YccS family putative transporter -
  KIG00_RS14270 (KIG00_14270) sxy/tfoX 2909771..2910400 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KIG00_RS14275 (KIG00_14275) sulA 2910619..2911128 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KIG00_RS14280 (KIG00_14280) ompA 2911485..2912525 (+) 1041 WP_000750416.1 porin OmpA -
  KIG00_RS14285 (KIG00_14285) matP 2912601..2913053 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KIG00_RS14290 (KIG00_14290) ycbZ 2913239..2914999 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=729279 KIG00_RS14270 WP_000839153.1 2909771..2910400(-) (sxy/tfoX) [Escherichia coli strain JNQH498]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=729279 KIG00_RS14270 WP_000839153.1 2909771..2910400(-) (sxy/tfoX) [Escherichia coli strain JNQH498]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1