Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   N5B55_RS05505 Genome accession   NZ_CP104381
Coordinates   1128054..1130576 (+) Length   840 a.a.
NCBI ID   WP_304539437.1    Uniprot ID   -
Organism   Ralstonia pickettii strain MCR     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1123054..1135576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5B55_RS05485 (N5B55_05490) - 1124025..1125104 (-) 1080 WP_304539435.1 hypothetical protein -
  N5B55_RS05490 (N5B55_05495) - 1125176..1126426 (+) 1251 WP_012761702.1 lipoprotein-releasing ABC transporter permease subunit -
  N5B55_RS05495 (N5B55_05500) lolD 1126419..1127147 (+) 729 WP_009238494.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  N5B55_RS05500 (N5B55_05505) - 1127232..1128044 (+) 813 WP_304539436.1 TatD family hydrolase -
  N5B55_RS05505 (N5B55_05510) comA 1128054..1130576 (+) 2523 WP_304539437.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N5B55_RS05510 (N5B55_05515) - 1130681..1132165 (+) 1485 WP_012761705.1 circularly permuted type 2 ATP-grasp protein -
  N5B55_RS05515 (N5B55_05520) - 1132240..1133190 (+) 951 WP_012761706.1 alpha-E domain-containing protein -
  N5B55_RS05520 (N5B55_05525) - 1133248..1134093 (+) 846 WP_065857501.1 transglutaminase family protein -
  N5B55_RS05525 (N5B55_05530) - 1134181..1135083 (+) 903 WP_012761708.1 hypothetical protein -

Sequence

Protein


Download         Length: 840 a.a.        Molecular weight: 90412.65 Da        Isoelectric Point: 8.9194

>NTDB_id=729251 N5B55_RS05505 WP_304539437.1 1128054..1130576(+) (comA) [Ralstonia pickettii strain MCR]
MRLRLIGFVAGCVALQMQATLAPVWLPLGVLVLCLLLAAVSRRRLTLFHVLLVAAAVAAGFGWSDWRAQQRMAVALGPAW
EGKDIVATGVVAELPQISDDATRFLFHIESSNAGDAVPARVRLSWYGTRTWGNAGEEDARPDRRVGIPDLQPGQRWQLTL
RLKRPHSLINPGGFDGEYAMLADNIRAVGYVRTGKRAQNIALDEAGTGFGIGVERWRASVRHRILDALPDGRYAAVIVAL
VMGDQSGIAPDDWDMFRRTGISHLVSISGLHITMIAGLFAALWMALWRRSFWLARWVRTPLPLRMPAPRAGAIAAMLAAF
VYCLLAGMGVPAQRTLLMLSTVAIARLTDRNVPASLSLCWAAAAVAVVDPWAVMSAGFWLSFGAVAIIFIAAQMALDGHR
SENADGWFGTTRRALAGGTRIQFAVTFGLLPFTLQLFQQTSVVSAAANGLAIPAVSFVTTPLALIGAALPDPLAQPVLAL
AEASFRWLVVWLEWLATPRWSVWVAPAGPIWAVLLSMVAVALLLMPGGLRAWAWRAQGALLLLPLVLTREPLPSPGEFRL
VAFDIGQGAAALVETANHRLLFDTGPRYGDHADAAARVIAPYLRAHGVEALDTLVVSHEDNDHAGGTETVIGAVPVRTML
ASLPPGHALRGTTDANNIGFADCLAGQAWTWDGVVFEVLHPRRLPPESERVSSNARSCVLRIANGRHAALLTGDIEAAQE
SALMAAETPGRLMADILLVPHHGSKTSSSGAFLDAVSPQVAVFQVGYRNRYGHPHPQVWQRYVARDIDGLRTDKTGAVVI
QTDGDVLDIQTARAMRPRYWSSAREVDPLATAAGAFDAPP

Nucleotide


Download         Length: 2523 bp        

>NTDB_id=729251 N5B55_RS05505 WP_304539437.1 1128054..1130576(+) (comA) [Ralstonia pickettii strain MCR]
ATGCGTCTGCGGTTGATCGGCTTTGTCGCCGGCTGCGTGGCATTGCAGATGCAGGCGACGCTGGCGCCGGTGTGGCTGCC
GCTTGGCGTGCTGGTGCTCTGTCTATTGCTGGCGGCGGTCTCGCGGCGTCGGCTAACGCTGTTTCACGTGTTGCTGGTCG
CCGCCGCCGTTGCGGCAGGCTTTGGCTGGAGCGATTGGCGCGCGCAGCAGCGCATGGCCGTGGCGCTCGGCCCTGCGTGG
GAAGGCAAGGACATCGTCGCGACGGGCGTGGTGGCCGAGTTGCCGCAGATCAGTGATGACGCCACCCGCTTTCTCTTCCA
CATCGAATCCAGCAATGCGGGTGATGCCGTGCCGGCCCGCGTGCGCCTGTCCTGGTATGGCACACGCACGTGGGGCAACG
CGGGCGAGGAAGATGCAAGGCCGGACCGACGCGTCGGCATCCCTGATCTGCAGCCCGGCCAACGCTGGCAATTGACGCTG
CGGCTGAAGCGTCCGCACAGCCTGATCAACCCCGGCGGCTTTGACGGCGAATACGCGATGCTGGCCGACAACATCCGGGC
CGTCGGCTATGTGCGTACAGGCAAGCGTGCGCAGAACATTGCACTGGATGAGGCGGGCACCGGTTTCGGAATCGGCGTGG
AGCGCTGGCGCGCCAGCGTGCGGCACCGCATCCTCGATGCCTTGCCCGATGGGCGCTACGCGGCTGTCATTGTCGCCCTG
GTGATGGGCGACCAGAGCGGCATCGCCCCCGACGACTGGGACATGTTCCGCCGCACCGGCATCAGCCACCTCGTCAGCAT
TTCAGGGCTGCACATCACGATGATCGCCGGGCTGTTTGCAGCGTTGTGGATGGCGCTGTGGCGTCGCTCGTTCTGGCTGG
CCCGCTGGGTGCGGACGCCATTGCCGCTGCGCATGCCGGCCCCGCGCGCAGGCGCCATCGCGGCCATGCTGGCGGCGTTC
GTCTACTGCCTGCTCGCCGGGATGGGCGTGCCGGCGCAGCGCACGCTGCTGATGCTCTCCACCGTAGCCATCGCCCGGCT
TACCGATCGGAATGTGCCGGCCAGCCTCTCGCTGTGCTGGGCGGCGGCCGCGGTGGCGGTGGTGGACCCGTGGGCGGTCA
TGTCGGCGGGGTTCTGGCTGTCGTTCGGCGCGGTGGCGATCATCTTCATCGCGGCGCAGATGGCGCTCGATGGCCATCGC
AGTGAAAACGCAGACGGCTGGTTTGGAACCACGCGCCGTGCGCTCGCCGGCGGTACGCGGATTCAGTTCGCGGTCACATT
CGGGCTGTTGCCTTTCACCTTGCAGCTGTTCCAGCAGACGTCGGTCGTCTCTGCTGCGGCGAATGGGCTGGCGATTCCAG
CGGTGAGTTTCGTGACGACACCGCTGGCGCTGATCGGCGCGGCCCTCCCGGACCCGCTGGCGCAGCCAGTGCTGGCGTTG
GCCGAAGCGAGCTTCCGGTGGCTGGTCGTTTGGCTTGAATGGCTGGCGACGCCGCGCTGGTCTGTGTGGGTTGCGCCGGC
TGGGCCCATCTGGGCAGTGTTGCTGTCGATGGTTGCGGTGGCACTCTTGCTGATGCCGGGTGGCCTGCGTGCATGGGCGT
GGCGTGCGCAGGGTGCCTTGCTCCTCTTGCCGTTGGTCCTGACGCGCGAGCCACTGCCATCGCCCGGCGAATTTCGGCTC
GTGGCGTTCGACATCGGCCAGGGCGCTGCGGCCTTGGTCGAAACGGCCAACCATCGCCTGCTGTTCGACACCGGCCCGCG
CTACGGAGACCATGCGGACGCCGCCGCCCGCGTCATCGCTCCCTATCTGCGAGCACATGGCGTGGAAGCGCTCGACACGC
TTGTCGTCAGCCACGAAGACAACGACCACGCCGGTGGCACCGAAACGGTGATCGGCGCGGTGCCGGTGCGCACCATGTTG
GCGTCTTTGCCTCCGGGGCACGCCCTGCGCGGCACGACCGATGCCAACAACATCGGTTTTGCCGATTGTTTGGCTGGGCA
AGCATGGACGTGGGACGGCGTTGTCTTTGAGGTGCTGCACCCGCGGCGTTTGCCGCCTGAAAGCGAGCGCGTGTCCAGCA
ACGCCCGCAGTTGTGTGCTGCGTATCGCCAATGGCCGCCACGCCGCCTTGCTGACCGGCGATATCGAAGCCGCTCAGGAA
AGCGCGCTGATGGCCGCAGAAACGCCTGGGCGACTGATGGCAGACATCTTGCTTGTGCCCCATCACGGCAGCAAGACAAG
CTCGAGCGGCGCGTTCTTGGACGCGGTTTCTCCGCAAGTGGCGGTTTTCCAGGTCGGCTACCGCAATCGGTACGGACATC
CGCATCCGCAGGTTTGGCAGCGCTACGTAGCGCGCGACATCGACGGTTTGCGCACGGACAAGACCGGTGCCGTCGTCATT
CAGACCGACGGCGATGTGCTGGACATCCAGACCGCGCGTGCCATGCGGCCGCGCTACTGGTCTTCCGCACGCGAAGTGGA
CCCCCTGGCAACGGCCGCCGGCGCCTTCGATGCCCCGCCGTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(23-194)

Competence protein (Competence)

(240-525)

Metallo-beta-lactamase superfamily (Lactamase_B)

(566-762)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

72.255

100

0.729