Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   N4T19_RS20950 Genome accession   NZ_CP104377
Coordinates   4607752..4608138 (+) Length   128 a.a.
NCBI ID   WP_021027286.1    Uniprot ID   -
Organism   Comamonas sp. PR12     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 4602752..4613138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4T19_RS20930 (N4T19_20930) - 4603687..4604175 (+) 489 WP_116924634.1 c-type cytochrome -
  N4T19_RS20935 (N4T19_20935) - 4604323..4605033 (+) 711 WP_116924635.1 Bax inhibitor-1 family protein -
  N4T19_RS20940 (N4T19_20940) hemL 4605122..4606420 (-) 1299 WP_260718928.1 glutamate-1-semialdehyde 2,1-aminomutase -
  N4T19_RS20945 (N4T19_20945) - 4606526..4607446 (-) 921 WP_260718929.1 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase -
  N4T19_RS20950 (N4T19_20950) pilG 4607752..4608138 (+) 387 WP_021027286.1 PleD family two-component system response regulator Regulator
  N4T19_RS20955 (N4T19_20955) - 4608148..4608513 (+) 366 WP_021027285.1 PleD family two-component system response regulator -
  N4T19_RS20960 (N4T19_20960) - 4608517..4609044 (+) 528 WP_021027284.1 chemotaxis protein CheW -
  N4T19_RS20965 (N4T19_20965) - 4609083..4611350 (+) 2268 WP_232539538.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14300.45 Da        Isoelectric Point: 4.7316

>NTDB_id=729232 N4T19_RS20950 WP_021027286.1 4607752..4608138(+) (pilG) [Comamonas sp. PR12]
MTVSADNFKVLVVDDSNTIRRSAEIFLKQGGYEVLLAEDGFDALSKINDFKPDMVFCDILMPKLDGYQTCAIVKRNDAFA
STPVVMLSSKDGVFDKARGRMVGCEDYLTKPFTKDQLLETVGRFVAER

Nucleotide


Download         Length: 387 bp        

>NTDB_id=729232 N4T19_RS20950 WP_021027286.1 4607752..4608138(+) (pilG) [Comamonas sp. PR12]
GTGACAGTTTCCGCAGACAACTTCAAGGTATTGGTGGTCGACGATAGCAATACCATTCGCAGAAGTGCTGAGATTTTTCT
CAAGCAGGGCGGCTATGAGGTGCTGCTTGCCGAAGACGGCTTCGACGCCCTCTCCAAAATCAACGATTTCAAGCCGGACA
TGGTGTTTTGCGACATCCTGATGCCAAAACTGGACGGCTACCAAACCTGCGCCATCGTCAAGCGCAATGATGCTTTTGCA
TCGACACCCGTGGTCATGCTGTCGTCCAAGGACGGCGTCTTTGACAAGGCCCGGGGACGAATGGTGGGGTGTGAAGACTA
CCTCACCAAGCCATTTACCAAAGATCAATTACTGGAAACCGTCGGACGTTTCGTTGCCGAGCGTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

58.333

93.75

0.547