Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   N4T19_RS15365 Genome accession   NZ_CP104377
Coordinates   3294795..3296180 (-) Length   461 a.a.
NCBI ID   WP_116926736.1    Uniprot ID   A0A363RII3
Organism   Comamonas sp. PR12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3289795..3301180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4T19_RS15345 (N4T19_15345) - 3290453..3291916 (+) 1464 WP_116926850.1 S1C family serine protease -
  N4T19_RS15350 (N4T19_15350) - 3291913..3292992 (+) 1080 WP_116926739.1 FHA domain-containing protein -
  N4T19_RS15355 (N4T19_15355) - 3293090..3294094 (+) 1005 WP_260718461.1 aldo/keto reductase -
  N4T19_RS15360 (N4T19_15360) - 3294116..3294790 (-) 675 WP_260718462.1 phytanoyl-CoA dioxygenase family protein -
  N4T19_RS15365 (N4T19_15365) radA 3294795..3296180 (-) 1386 WP_116926736.1 DNA repair protein RadA Machinery gene
  N4T19_RS15370 (N4T19_15370) - 3296316..3296942 (+) 627 WP_260718463.1 glutathione S-transferase family protein -
  N4T19_RS15375 (N4T19_15375) - 3296956..3297822 (-) 867 WP_260718464.1 substrate-binding domain-containing protein -
  N4T19_RS15380 (N4T19_15380) - 3297877..3299499 (-) 1623 WP_182344099.1 ABC transporter substrate-binding protein -
  N4T19_RS15385 (N4T19_15385) - 3299670..3300287 (-) 618 WP_260718465.1 4'-phosphopantetheinyl transferase family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48175.37 Da        Isoelectric Point: 7.0606

>NTDB_id=729226 N4T19_RS15365 WP_116926736.1 3294795..3296180(-) (radA) [Comamonas sp. PR12]
MAKEKSVYICSECGGTSPRWLGKCPACNAWNTLVESAAESAGGGKNRLSQTGRTGYAGQAQAVTPLAAIEATEVARTPSG
IAELDRVLGGGIVEGGVVLIGGDPGIGKSTLLLQAVDALQRQGLPALYVTGEESGAQVALRSRRLGLDNSQVDVLSEIQL
EKILATCESRQPAIVIIDSIQTMYSDQLSSAPGSVAQVRECAAHLTRMAKSTGIAVVLVGHVTKEGALAGPRVLEHMVDT
VLYFEGDTHSSFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVNNPSAIFLSQHSEPVPGSCVLVTLEGSRPLLVEIQALVD
DGGPSPRRLSVGLDRDRLAMLLAVLNRHAGVACADQDVFVNAVGGVRIGEPAADLAVMLSITSSLRGKALPKGFIAFGEV
GLAGEVRPAPRGQERLKEAAKLGFSVAVVPRANAPKKPIEGITIHPVDRVDEAISLVRGLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=729226 N4T19_RS15365 WP_116926736.1 3294795..3296180(-) (radA) [Comamonas sp. PR12]
ATGGCCAAAGAAAAATCCGTTTACATCTGCAGCGAATGCGGCGGCACCAGCCCGCGCTGGCTGGGCAAGTGCCCCGCTTG
CAATGCCTGGAACACCCTGGTGGAGAGCGCCGCCGAATCGGCAGGTGGCGGCAAGAACCGCCTGAGCCAGACCGGCCGCA
CCGGTTACGCCGGCCAGGCCCAGGCCGTCACGCCGCTGGCCGCCATCGAGGCCACCGAGGTGGCTCGCACCCCCAGCGGC
ATTGCCGAGCTGGACCGGGTGCTGGGCGGCGGCATTGTCGAAGGCGGGGTGGTGCTGATCGGCGGCGACCCGGGCATTGG
CAAATCGACCTTGCTGCTGCAGGCGGTGGATGCGCTGCAGCGCCAGGGGCTGCCCGCCCTGTATGTGACCGGTGAGGAAA
GTGGCGCGCAAGTGGCGCTGCGCTCGCGCCGGCTGGGGCTGGACAACAGCCAGGTCGATGTGCTGAGCGAGATCCAGCTG
GAGAAGATTCTGGCCACCTGCGAGAGCAGGCAGCCGGCCATCGTCATCATCGACTCGATCCAAACCATGTACTCGGACCA
GCTGAGTTCGGCCCCCGGCTCGGTGGCCCAGGTGCGCGAATGCGCGGCGCACCTGACGCGCATGGCCAAGAGCACCGGCA
TCGCGGTGGTACTGGTCGGCCATGTGACCAAGGAAGGCGCACTGGCCGGCCCGCGCGTGCTCGAACACATGGTCGATACC
GTGCTGTACTTTGAAGGCGACACGCACAGCAGCTTCCGCCTGGTGCGCGCCATCAAGAACCGCTTTGGCGCCGTCAACGA
GATTGGCGTCTTCGCGATGACCGAAAAAGGCCTCAAGGGCGTGAACAACCCCAGCGCCATCTTCCTGAGCCAGCACAGCG
AGCCGGTGCCCGGCAGCTGCGTGCTCGTCACCCTGGAAGGCTCGCGCCCGCTGTTGGTCGAGATCCAGGCGCTGGTCGAT
GACGGCGGCCCCAGCCCGCGCCGCCTGTCGGTGGGCCTGGACCGCGACCGCCTGGCGATGCTGCTGGCCGTGCTCAACCG
CCATGCCGGCGTGGCCTGCGCCGACCAGGATGTGTTTGTCAACGCCGTGGGCGGCGTTCGCATTGGCGAGCCAGCCGCTG
ACCTGGCTGTCATGCTCTCCATCACCAGCAGCCTGCGCGGCAAGGCACTGCCCAAGGGCTTTATCGCCTTTGGCGAGGTG
GGCCTGGCCGGCGAAGTGCGCCCCGCCCCGCGCGGCCAGGAACGCCTGAAGGAAGCCGCCAAGCTGGGCTTTAGCGTCGC
CGTGGTGCCCAGAGCCAATGCGCCCAAAAAGCCGATCGAGGGCATCACGATCCACCCGGTGGACCGGGTGGACGAGGCGA
TATCGCTGGTGCGGGGGCTGGACTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-226)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A363RII3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.696

99.783

0.486
  radA Streptococcus mitis NCTC 12261

45.055

98.698

0.445
  radA Streptococcus pneumoniae D39

45.843

96.529

0.443
  radA Streptococcus pneumoniae TIGR4

45.843

96.529

0.443
  radA Streptococcus pneumoniae R6

45.843

96.529

0.443
  radA Streptococcus pneumoniae Rx1

45.843

96.529

0.443
  radA Streptococcus mitis SK321

45.946

96.312

0.443