Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   N4502_RS05755 Genome accession   NZ_CP104371
Coordinates   1156318..1156947 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2021CK-01784     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1151318..1161947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4502_RS05740 (N4502_05740) helD 1151560..1153614 (-) 2055 WP_001305911.1 DNA helicase IV -
  N4502_RS05745 (N4502_05745) yccF 1153737..1154183 (+) 447 WP_001261235.1 YccF domain-containing protein -
  N4502_RS05750 (N4502_05750) yccS 1154193..1156355 (+) 2163 WP_000875037.1 YccS family putative transporter -
  N4502_RS05755 (N4502_05755) sxy/tfoX 1156318..1156947 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  N4502_RS05760 (N4502_05760) sulA 1157166..1157675 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  N4502_RS05765 (N4502_05765) ompA 1158032..1159084 (+) 1053 WP_001305912.1 porin OmpA -
  N4502_RS05770 (N4502_05770) matP 1159161..1159613 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  N4502_RS05775 (N4502_05775) ycbZ 1159799..1161559 (+) 1761 WP_000156479.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=729172 N4502_RS05755 WP_000839153.1 1156318..1156947(-) (sxy/tfoX) [Escherichia coli strain 2021CK-01784]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=729172 N4502_RS05755 WP_000839153.1 1156318..1156947(-) (sxy/tfoX) [Escherichia coli strain 2021CK-01784]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGTGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1