Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   LDN98_RS14230 Genome accession   NZ_AP024518
Coordinates   2938331..2938846 (-) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli strain E148     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2933331..2943846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDN98_RS14205 (NIAHE148_27280) ygaZ 2933730..2934467 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  LDN98_RS14210 (NIAHE148_27290) ygaH 2934457..2934792 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  LDN98_RS14215 (NIAHE148_27300) emrR 2934883..2935413 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  LDN98_RS14220 (NIAHE148_27310) emrA 2935540..2936712 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  LDN98_RS14225 (NIAHE148_27320) emrB 2936729..2938267 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  LDN98_RS14230 (NIAHE148_27330) luxS 2938331..2938846 (-) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  LDN98_RS14235 (NIAHE148_27340) gshA 2938996..2940552 (-) 1557 WP_023155426.1 glutamate--cysteine ligase -
  LDN98_RS14240 (NIAHE148_27350) yqaA 2940625..2941053 (-) 429 WP_001287454.1 YqaA family protein -
  LDN98_RS14245 (NIAHE148_27360) yqaB 2941050..2941616 (-) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  LDN98_RS14275 (NIAHE148_27370) csrA 2943211..2943396 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=72908 LDN98_RS14230 WP_001130210.1 2938331..2938846(-) (luxS) [Escherichia coli strain E148]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=72908 LDN98_RS14230 WP_001130210.1 2938331..2938846(-) (luxS) [Escherichia coli strain E148]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737

Multiple sequence alignment