Detailed information NTG0729063

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: N4269_RS11410
• Genome accession: NZ_CP104356
• Coordinates: 2530297..2531304 (-)
• Length: 335 a.a.
• NCBI ID: WP_095465129.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain PNUSAV001141
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2525297..2536304

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N4269_RS11400 (N4269_11400)	cysM	2526461..2527348 (+)	888	WP_001279364.1	cysteine synthase CysM	-
N4269_RS11405 (N4269_11405)	mutS	2527615..2530203 (+)	2589	WP_001892042.1	DNA mismatch repair protein MutS	-
N4269_RS11410 (N4269_11410)	rpoS	2530297..2531304 (-)	1008	WP_095465129.1	RNA polymerase sigma factor RpoS	Regulator
N4269_RS11415 (N4269_11415)	nlpD	2531378..2532313 (-)	936	WP_000177559.1	murein hydrolase activator NlpD	-
N4269_RS11420 (N4269_11420)	-	2532313..2532939 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
N4269_RS11425 (N4269_11425)	surE	2532932..2533684 (-)	753	WP_044126957.1	5'/3'-nucleotidase SurE	-
N4269_RS11430 (N4269_11430)	truD	2533686..2534771 (-)	1086	WP_044126956.1	tRNA pseudouridine(13) synthase TruD	-
N4269_RS11435 (N4269_11435)	ispF	2534801..2535277 (-)	477	WP_000619207.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
N4269_RS11440 (N4269_11440)	ispD	2535274..2535972 (-)	699	WP_134986894.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
N4269_RS11445 (N4269_11445)	ftsB	2535969..2536253 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38476.31 Da
• Isoelectric Point: 4.3648

>NTDB_id=729063 N4269_RS11410 WP_095465129.1 2530297..2531304(-) (rpoS) [Vibrio cholerae strain PNUSAV001141]
MSVSNTVTKVEEFDFEDEALEVLETDAELASDEELVAAEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=729063 N4269_RS11410 WP_095465129.1 2530297..2531304(-) (rpoS) [Vibrio cholerae strain PNUSAV001141]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGCTGAAGGGGCAAGTGAAGATGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTTTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACGCCAGAAGAAATTGCTCTTGAGTTAGATCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGTGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCTCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	99.403	100	0.994