Detailed information NTG0729058

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: N4269_RS10985
• Genome accession: NZ_CP104356
• Coordinates: 2434272..2437805 (+)
• Length: 1177 a.a.
• NCBI ID: WP_180978838.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain PNUSAV001141
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2429272..2442805

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N4269_RS10965 (N4269_10965)	erpA	2429851..2430192 (-)	342	WP_000005741.1	iron-sulfur cluster insertion protein ErpA	-
N4269_RS10970 (N4269_10970)	hemL	2430476..2431774 (+)	1299	WP_042989812.1	glutamate-1-semialdehyde 2,1-aminomutase	-
N4269_RS10975 (N4269_10975)	-	2432028..2433113 (+)	1086	WP_001290813.1	AI-2E family transporter	-
N4269_RS10980 (N4269_10980)	rsmC	2433186..2434208 (+)	1023	WP_001183372.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
N4269_RS10985 (N4269_10985)	chiS	2434272..2437805 (+)	3534	WP_180978838.1	two-component system sensor histidine kinase ChiS	Regulator
N4269_RS10990 (N4269_10990)	-	2438715..2440385 (+)	1671	WP_000880698.1	ABC transporter substrate-binding protein	-
N4269_RS10995 (N4269_10995)	-	2440555..2441541 (+)	987	WP_001888563.1	ABC transporter permease	-
N4269_RS11000 (N4269_11000)	-	2441544..2442569 (+)	1026	WP_134986906.1	ABC transporter permease	-

Sequence

Protein

• Length: 1177 a.a.
• Molecular weight: 133122.30 Da
• Isoelectric Point: 6.9113

>NTDB_id=729058 N4269_RS10985 WP_180978838.1 2434272..2437805(+) (chiS) [Vibrio cholerae strain PNUSAV001141]
MRLCPRFSLDLLVKVKKLVNFVTLGFSCLSPTHAWRSPQSFTESNTLIMFRFYRKQKFKRLQNTLMAAFLALSIIPLTIT
ALFFLHSHSKDLEQQSTSYLVSVRDNKQQQVIDYMMAKESEVMGFVRSELAYASGGRFYGLVNAFQRLDVSIEAAREHAQ
QRYITGSGDQIKTSVLPQSSSYVGSERYRLLHKRYHWAYLELLKRSDFDDILLVDIDGNVVYSIYKYDNFGTNLLTGKYQ
DTNLGHTFKRLEQTVNEQRKTNEDFTPVVISDFVQEDGKQYAWLGAPIIQQGYLHSYAMFRLPSNAITKLIAEGSSNPSM
QTILVGQDHRSRTLTSAEIAVEKSKAVVDLALSGKRAVGTYTNTDGEQIIAAYAPINLKNIHWALVVELPEKEAFARVRQ
LEKLFVFAMLTAIVLVVIASHYLSNFITSPLLKLTWAAERVSAGDLDEAMINTERKDEIGRLAVSFERMQRSIREKISLI
KSQNKELESNLLIIRKQNDELQLANKLKDEFLATTSHELRTPLHGMIGIAEALISGANGPISAAHKYQLDIIISSGQRLA
TLVDDLLDYHKMRYGALDIQRCAVDLSSATRLVLELSHHLLGKKTLRIINQVSEQPVWVSADPQRLEQVLYNLIGNAIKY
TSEGKIVISATYIDDKVRVQVVDTGQGIPAEQLEHIFEPLIQAGHDASRYRQGAGLGLSISRQLIELMHGTLYVSSQPMV
GTTFSFTLPLASEEEIAQARLTELPHFQAPEVLDTELPEQSNLPENEHGPLLLVADDEPVNLRVLDSFLRLEGYRVHTAQ
DGHQVLEAIKREKPELVLLDIMMPGMSGYQVCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELA
ARIVAHLTASKAELRRIENAQLQKELKHRAMVEASLLETQGRLLEQLESAPEAILCVKEGNKVRFANEAAARLFRRTPEQ
LKRSNAEELIAPKFLNIEQEHYCGNIDVYVDDVRQHLSADVLRLPQGSGLQAMYIFNVGGSVNAARIHNLETAVEALSSY
AFEGDKDKLQKLKELGGEFTRLADKASGEHQSKQDLMRAVLVEAMTSALNYWERVSGQSKFTFAEQSGLWRVYLDRSTLQ
TRTLDKYLRIETLPKTPRWRTVLNSLDYILEHCKEAGPERTHIEMQRDKLQKLLTSE

Nucleotide

• Length: 3534 bp

>NTDB_id=729058 N4269_RS10985 WP_180978838.1 2434272..2437805(+) (chiS) [Vibrio cholerae strain PNUSAV001141]
TTGCGTCTATGCCCACGCTTTAGCTTGGACTTACTTGTCAAAGTAAAAAAACTCGTTAATTTCGTTACTTTAGGTTTTTC
TTGTCTATCACCCACTCATGCTTGGCGATCGCCGCAGAGTTTCACCGAAAGTAACACCTTAATTATGTTTAGGTTCTATC
GAAAACAAAAATTCAAACGCCTGCAAAATACCTTGATGGCTGCATTTTTGGCCCTCAGCATTATTCCTTTGACCATTACT
GCGTTGTTTTTCCTACATTCACACAGTAAAGATCTGGAGCAGCAGAGTACCTCTTACCTCGTTTCTGTTCGGGATAATAA
ACAGCAACAGGTCATCGACTACATGATGGCCAAAGAGTCGGAAGTGATGGGTTTTGTTCGCTCCGAGCTGGCTTATGCCA
GTGGCGGGCGTTTTTATGGTCTGGTGAATGCTTTCCAGCGTTTAGACGTCAGTATTGAAGCGGCTCGTGAACATGCTCAG
CAGCGCTATATCACCGGATCGGGTGACCAAATAAAAACCTCGGTGCTCCCCCAATCAAGCAGCTACGTGGGCAGTGAACG
CTATCGACTGCTGCATAAACGCTACCACTGGGCTTACTTAGAACTGCTGAAACGGTCGGACTTTGATGACATTTTATTGG
TCGATATTGATGGCAACGTCGTTTATTCGATTTATAAATACGACAATTTTGGCACCAACTTATTAACGGGCAAATACCAA
GACACCAATCTAGGCCATACCTTCAAGCGTTTAGAACAAACGGTCAATGAACAGCGCAAAACCAACGAAGATTTCACCCC
TGTCGTGATTTCTGATTTCGTGCAAGAGGATGGCAAACAATACGCTTGGCTTGGCGCACCGATTATTCAGCAAGGCTACT
TGCATAGTTACGCGATGTTCCGCTTGCCAAGTAACGCGATCACCAAACTCATCGCAGAAGGCAGTAGCAATCCTTCGATG
CAAACCATTTTGGTGGGACAAGATCACCGCTCAAGAACCTTAACTTCCGCCGAAATTGCGGTTGAAAAAAGTAAAGCTGT
GGTCGATTTAGCCTTATCGGGCAAACGCGCCGTAGGCACTTACACCAATACCGATGGTGAACAGATCATCGCGGCCTACG
CACCGATCAATTTGAAAAATATCCATTGGGCTCTGGTGGTTGAACTGCCAGAGAAAGAAGCGTTTGCTCGCGTTCGTCAG
TTAGAGAAACTGTTTGTTTTTGCGATGTTGACGGCCATCGTCTTAGTGGTCATCGCCTCGCATTACCTTTCCAATTTCAT
TACCTCACCGCTTTTGAAGCTGACATGGGCAGCCGAACGTGTTTCGGCAGGCGATCTTGATGAAGCCATGATCAATACCG
AACGCAAAGATGAAATTGGTCGCTTGGCGGTAAGTTTTGAGCGTATGCAGCGTTCCATTCGCGAAAAAATATCGCTGATC
AAATCGCAAAATAAAGAGTTAGAAAGCAATTTACTGATCATTCGTAAGCAAAACGATGAGTTACAGCTAGCGAATAAGCT
AAAAGATGAGTTCCTCGCGACCACATCACATGAATTACGCACCCCATTGCATGGCATGATTGGTATTGCCGAAGCCCTGA
TCTCGGGGGCAAATGGCCCGATTTCAGCAGCGCACAAGTATCAACTCGACATCATTATCAGCAGTGGGCAGCGCTTAGCG
ACTCTGGTTGATGATCTACTCGATTACCACAAAATGCGCTATGGCGCGCTGGATATTCAAAGGTGTGCCGTTGATTTATC
GAGCGCTACGCGCTTAGTCTTGGAGCTTTCTCACCATTTACTTGGCAAGAAAACGCTGCGCATTATTAATCAAGTCTCAG
AACAACCGGTCTGGGTTTCTGCGGATCCTCAACGCTTAGAGCAAGTCCTGTATAACTTGATCGGCAATGCCATTAAGTAC
ACTTCCGAAGGCAAAATTGTTATCTCCGCAACCTATATTGACGATAAAGTGCGAGTGCAGGTGGTGGATACAGGTCAAGG
GATTCCGGCAGAACAACTGGAGCACATCTTTGAGCCATTGATTCAAGCGGGCCATGATGCGAGTCGCTATCGCCAAGGCG
CAGGACTCGGGCTTTCCATCAGTCGTCAGTTAATCGAATTGATGCACGGCACTCTCTACGTAAGTAGTCAGCCGATGGTT
GGCACTACCTTTAGCTTCACGCTGCCTCTGGCGAGCGAAGAAGAGATTGCTCAAGCGCGCTTGACCGAGCTCCCCCACTT
CCAAGCACCGGAAGTGTTGGATACTGAACTGCCCGAGCAAAGCAACTTACCCGAAAATGAACATGGCCCACTTCTGTTGG
TCGCCGATGATGAACCAGTCAACCTGCGTGTGCTGGACAGCTTTTTACGTCTTGAAGGTTATCGCGTACATACCGCGCAA
GATGGCCATCAAGTACTTGAAGCAATTAAACGTGAAAAACCTGAACTGGTGTTACTCGACATCATGATGCCAGGCATGAG
CGGTTATCAAGTGTGTGAAAAACTTCGACAAACTTACGACCACGCTGAACTGCCTATTATTATGCTGACGGCTCTCAACC
AATCTGATGACCGGGTACGAGGGTTTGAAGCTGGAGCCAATGACTACTTATCCAAACCATTCAACAAACAAGAGCTGGCC
GCGCGCATTGTCGCTCACCTCACGGCGAGCAAAGCCGAACTGCGCCGCATTGAGAATGCCCAACTGCAAAAAGAGTTGAA
ACATCGCGCTATGGTAGAAGCGAGCCTATTGGAAACCCAAGGCCGATTATTGGAACAGTTAGAATCTGCGCCAGAAGCGA
TTTTGTGCGTTAAAGAGGGCAATAAAGTACGTTTTGCTAACGAAGCGGCAGCACGTTTATTTAGACGTACCCCTGAGCAG
CTCAAACGCTCCAACGCCGAAGAACTGATTGCTCCTAAATTCTTGAATATTGAGCAAGAGCATTACTGCGGCAATATTGA
TGTTTACGTCGATGATGTGCGCCAACATCTCTCTGCCGATGTCCTGCGCTTGCCGCAAGGTTCTGGCTTACAAGCGATGT
ACATTTTTAATGTCGGAGGCAGCGTCAATGCCGCGCGGATTCATAACCTCGAAACCGCGGTAGAAGCTCTGTCTAGCTAT
GCCTTCGAAGGCGATAAAGACAAGCTGCAAAAACTCAAGGAACTGGGTGGTGAGTTTACTCGTCTTGCAGATAAAGCCTC
GGGCGAGCATCAATCGAAACAAGATTTGATGCGTGCCGTGTTAGTCGAAGCCATGACCAGTGCCTTGAACTATTGGGAAC
GAGTCTCAGGGCAAAGCAAGTTCACGTTTGCCGAACAAAGTGGCTTGTGGCGCGTTTATCTTGACCGCAGCACCCTACAA
ACTCGTACCCTAGACAAATACTTACGAATTGAGACACTGCCTAAAACACCGCGTTGGCGAACCGTACTGAACTCGCTCGA
CTATATTCTTGAGCATTGCAAAGAAGCAGGCCCTGAGCGTACCCACATCGAAATGCAGCGCGATAAATTGCAAAAACTCC
TGACCAGTGAATAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (773-883)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (622-731)

• His Kinase A (phospho-acceptor) domain (HisKA) (508-573)

• PAS domain (PAS_8) (927-961)

• HAMP domain (HAMP) (423-475)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	99.83	100	0.998