Detailed information NTG0729035

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: N4269_RS01090
• Genome accession: NZ_CP104356
• Coordinates: 233194..234201 (+)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae strain PNUSAV001141
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 228194..239201

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N4269_RS01070 (N4269_01070)	metJ	228197..228514 (+)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-
N4269_RS01075 (N4269_01075)	-	228626..229903 (-)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
N4269_RS01080 (N4269_01080)	rpmE	230211..230429 (-)	219	WP_000643446.1	50S ribosomal protein L31	-
N4269_RS01085 (N4269_01085)	priA	230684..232888 (+)	2205	WP_134986621.1	primosomal protein N'	-
N4269_RS01090 (N4269_01090)	cytR	233194..234201 (+)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
N4269_RS01095 (N4269_01095)	-	234373..234924 (+)	552	WP_001884022.1	SPOR domain-containing protein	-
N4269_RS01100 (N4269_01100)	hslV	235061..235618 (+)	558	WP_000208247.1	ATP-dependent protease subunit HslV	-
N4269_RS01105 (N4269_01105)	hslU	235684..237015 (+)	1332	WP_001293366.1	HslU--HslV peptidase ATPase subunit	-
N4269_RS01110 (N4269_01110)	-	237119..238036 (+)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
N4269_RS01115 (N4269_01115)	rraA	238111..238626 (+)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=729035 N4269_RS01090 WP_000224452.1 233194..234201(+) (cytR) [Vibrio cholerae strain PNUSAV001141]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=729035 N4269_RS01090 WP_000224452.1 233194..234201(+) (cytR) [Vibrio cholerae strain PNUSAV001141]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCTGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCCGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGCTGCGTCGTGCTGGTATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGTTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904