Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   N4267_RS17585 Genome accession   NZ_CP104355
Coordinates   806978..808147 (+) Length   389 a.a.
NCBI ID   WP_001039905.1    Uniprot ID   -
Organism   Vibrio cholerae strain PNUSAV001140     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 801978..813147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4267_RS17570 (N4267_17570) - 802810..803799 (-) 990 WP_134987586.1 GTP-binding protein -
  N4267_RS17575 (N4267_17575) clcA 804266..805672 (+) 1407 WP_000107452.1 H(+)/Cl(-) exchange transporter ClcA -
  N4267_RS17580 (N4267_17580) - 805819..806781 (+) 963 WP_134987587.1 TDT family transporter -
  N4267_RS17585 (N4267_17585) cqsA 806978..808147 (+) 1170 WP_001039905.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  N4267_RS17590 (N4267_17590) cqsS 808232..810292 (-) 2061 WP_001885480.1 quorum-sensing CAI-1 autoinducer sensor kinase/phosphatase CqsS Regulator

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 43788.05 Da        Isoelectric Point: 6.6781

>NTDB_id=729027 N4267_RS17585 WP_001039905.1 806978..808147(+) (cqsA) [Vibrio cholerae strain PNUSAV001140]
MNKPQLPDFIQDKIDHFIENFIAINKNGKHLVLGKHASSEDIILQSNDYLSLANHPLIKAHLAKSLLEEHQSLFMSAIFL
QSDYDKPPIESRLAKFTGFKECLLSQSGWCANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAKIHPFMHNNCDHLRT
LIQRYGPGIIAVDSIYSTIGTLAPLTELVRISQEYGCALLVDESHSLGTHGPKGSGLLAELNLTDEVHFMTASLAKTFSY
RAGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLESTLEIIECSDDKRKKLERMSRKLRIGLTQLGLTIRSESQIISL
ETGDERNTEKVRDFLESNGLFGSVFCRPATTKNKNIIRFSLNSDVTDEQITRIIEICSDAVKRSDFYFR

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=729027 N4267_RS17585 WP_001039905.1 806978..808147(+) (cqsA) [Vibrio cholerae strain PNUSAV001140]
ATGAACAAGCCTCAACTTCCTGATTTTATTCAGGACAAAATCGACCACTTTATTGAAAACTTTATTGCCATAAACAAAAA
TGGAAAACATTTAGTGCTGGGTAAGCATGCCAGCAGTGAGGATATTATTTTACAAAGCAATGATTATCTCTCCTTGGCTA
ATCATCCATTGATTAAAGCTCACTTAGCAAAGTCATTACTAGAAGAACATCAAAGCCTGTTTATGTCAGCGATCTTTTTA
CAAAGTGATTATGACAAACCACCAATCGAAAGCCGACTAGCTAAATTCACAGGTTTCAAAGAATGTCTGTTATCCCAATC
GGGCTGGTGCGCTAACGTGGGCCTTTTACAGACAATTTGCCAACCGAATACCAATGTATACATCGATTTCTTTGCTCACA
TGTCACTGTGGGAGGGAGCACGTTATGCGAATGCAAAAATACACCCTTTTATGCATAACAACTGCGATCATTTACGCACA
TTAATTCAACGTTACGGCCCTGGAATTATAGCTGTTGACTCCATCTATAGCACAATAGGAACTCTGGCACCGTTAACAGA
ATTAGTCAGAATCAGTCAGGAGTACGGTTGTGCTTTGTTAGTGGATGAATCTCATTCTCTAGGCACGCATGGTCCGAAAG
GTTCTGGTTTACTCGCGGAGTTGAATCTCACTGATGAGGTGCATTTTATGACTGCCAGTTTAGCCAAAACGTTTTCCTAT
CGAGCTGGAGCCATTTGGTGCAACAATGAAGTGAATCGCTGCGTTCCTTTTATTAGTTATCCGGCTATTTTTAGCTCTAC
TTTGCTGCCCTATGAAGCAGCTGGATTGGAAAGTACATTGGAAATTATTGAATGTTCAGATGACAAACGAAAAAAACTAG
AACGTATGTCGAGAAAATTACGTATTGGATTAACCCAACTTGGCTTAACCATCCGCAGTGAAAGCCAGATTATCAGCCTA
GAAACTGGAGATGAAAGAAATACCGAAAAAGTGCGTGACTTCCTAGAGAGTAATGGATTATTTGGGTCAGTATTTTGTAG
GCCGGCCACCACAAAAAATAAAAACATTATTCGTTTCTCACTTAATAGTGATGTGACCGATGAACAGATAACGAGAATAA
TTGAGATCTGTTCTGATGCAGTGAAGCGCAGTGATTTTTACTTTCGCTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(42-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

85.861

100

0.859