Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   N4T41_RS17185 Genome accession   NZ_CP104340
Coordinates   3213932..3214405 (+) Length   157 a.a.
NCBI ID   WP_001214057.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2021CK-01409     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3208932..3219405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4T41_RS17160 (N4T41_17170) - 3209394..3211499 (-) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  N4T41_RS17165 (N4T41_17175) - 3211540..3211670 (-) 131 Protein_3047 hypothetical protein -
  N4T41_RS17170 (N4T41_17180) rpoZ 3211709..3211987 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  N4T41_RS17175 (N4T41_17185) gmk 3212060..3212689 (-) 630 WP_000015937.1 guanylate kinase -
  N4T41_RS17180 (N4T41_17190) ispH 3212812..3213762 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  N4T41_RS17185 (N4T41_17195) fimU 3213932..3214405 (+) 474 WP_001214057.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  N4T41_RS17190 (N4T41_17200) pilV 3214399..3214959 (+) 561 WP_100222559.1 type IV pilus modification protein PilV Machinery gene
  N4T41_RS17195 (N4T41_17205) pilW 3214960..3215961 (+) 1002 WP_000079202.1 PilW family protein Machinery gene
  N4T41_RS17200 (N4T41_17210) pilX 3215958..3216776 (+) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16863.51 Da        Isoelectric Point: 8.5355

>NTDB_id=728789 N4T41_RS17185 WP_001214057.1 3213932..3214405(+) (fimU) [Acinetobacter baumannii strain 2021CK-01409]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLEIKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=728789 N4T41_RS17185 WP_001214057.1 3213932..3214405(+) (fimU) [Acinetobacter baumannii strain 2021CK-01409]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAATTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGTCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994