Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   N4T40_RS07880 Genome accession   NZ_CP104335
Coordinates   1557294..1557620 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain 2021CK-01408     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1552294..1562620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4T40_RS07855 (N4T40_07855) hemC 1552910..1553827 (+) 918 WP_002159654.1 hydroxymethylbilane synthase -
  N4T40_RS07860 (N4T40_07860) - 1553832..1554599 (+) 768 WP_000897411.1 uroporphyrinogen-III synthase -
  N4T40_RS07865 (N4T40_07865) - 1554608..1555448 (+) 841 Protein_1512 hypothetical protein -
  N4T40_RS07870 (N4T40_07870) - 1555458..1556651 (+) 1194 WP_000681770.1 hypothetical protein -
  N4T40_RS07875 (N4T40_07875) - 1556659..1557099 (+) 441 WP_000661569.1 thioesterase family protein -
  N4T40_RS07880 (N4T40_07880) hns 1557294..1557620 (+) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  N4T40_RS07885 (N4T40_07885) gspN 1557953..1558696 (+) 744 WP_000730343.1 type II secretion system protein N -
  N4T40_RS07890 (N4T40_07890) - 1558696..1559531 (+) 836 Protein_1517 type II secretion system protein N -
  N4T40_RS07895 (N4T40_07895) gspD 1559573..1561843 (+) 2271 WP_001196432.1 type II secretion system secretin GspD -
  N4T40_RS07900 (N4T40_07900) - 1561884..1562513 (+) 630 WP_000219973.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=728737 N4T40_RS07880 WP_000801427.1 1557294..1557620(+) (hns) [Acinetobacter baumannii strain 2021CK-01408]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=728737 N4T40_RS07880 WP_000801427.1 1557294..1557620(+) (hns) [Acinetobacter baumannii strain 2021CK-01408]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1