Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   N4T40_RS03960 Genome accession   NZ_CP104335
Coordinates   752486..753370 (-) Length   294 a.a.
NCBI ID   WP_260746201.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2021CK-01408     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 747486..758370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4T40_RS03945 (N4T40_03945) miaB 749333..750784 (+) 1452 WP_000218141.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  N4T40_RS03950 (N4T40_03950) - 750822..751910 (+) 1089 WP_000122983.1 PhoH family protein -
  N4T40_RS03955 (N4T40_03955) ybeY 751920..752396 (+) 477 WP_000703570.1 rRNA maturation RNase YbeY -
  N4T40_RS03960 (N4T40_03960) tonB2 752486..753370 (-) 885 WP_260746201.1 energy transducer TonB Machinery gene
  N4T40_RS03965 (N4T40_03965) - 753601..754272 (+) 672 WP_001193959.1 hypothetical protein -
  N4T40_RS03970 (N4T40_03970) - 754430..755143 (+) 714 WP_000201544.1 DUF3108 domain-containing protein -
  N4T40_RS03975 (N4T40_03975) - 755217..755792 (+) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  N4T40_RS03980 (N4T40_03980) wrbA 755845..756438 (-) 594 WP_001183347.1 NAD(P)H:quinone oxidoreductase -
  N4T40_RS03985 (N4T40_03985) - 756725..757972 (+) 1248 WP_000893466.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33591.51 Da        Isoelectric Point: 9.0935

>NTDB_id=728713 N4T40_RS03960 WP_260746201.1 752486..753370(-) (tonB2) [Acinetobacter baumannii strain 2021CK-01408]
MLKKRSLSIEPFYYWWQDRIFIVAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIRPTEDVIKHADFLAQADQQGSGA
FREAHRMSSNSPAPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSLQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=728713 N4T40_RS03960 WP_260746201.1 752486..753370(-) (tonB2) [Acinetobacter baumannii strain 2021CK-01408]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAATCTTTATTGTCGCGATAATACT
CGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCGTCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTACTGAAGATGTGATCAAGCATGCAGACTTCTTAGCTCAAGCCGATCAACAAGGTTCAGGGGCT
TTTCGGGAAGCTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTTGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAAATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCGGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCGTTTGGCCGTTTTGA
TGCAAATATGAAAGATATTTCGGAGCTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

98.98

100

0.99