Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   N3115_RS03645 Genome accession   NZ_CP104332
Coordinates   706211..708061 (-) Length   616 a.a.
NCBI ID   WP_152019302.1    Uniprot ID   -
Organism   Aliarcobacter butzleri strain P1200     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 701211..713061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N3115_RS03630 (N3115_03630) - 701623..702750 (+) 1128 WP_152019305.1 iron-containing alcohol dehydrogenase -
  N3115_RS03635 (N3115_03635) - 702799..705060 (-) 2262 WP_152019304.1 methyl-accepting chemotaxis protein -
  N3115_RS03640 (N3115_03640) - 705186..706208 (-) 1023 WP_152019303.1 alanine racemase -
  N3115_RS03645 (N3115_03645) uvrC 706211..708061 (-) 1851 WP_152019302.1 excinuclease ABC subunit UvrC Machinery gene
  N3115_RS03650 (N3115_03650) - 708218..710608 (+) 2391 WP_260765691.1 methyl-accepting chemotaxis protein -
  N3115_RS03655 (N3115_03655) - 710616..711278 (-) 663 WP_152019867.1 response regulator transcription factor -
  N3115_RS03660 (N3115_03660) - 711275..712339 (-) 1065 WP_260765692.1 hybrid sensor histidine kinase/response regulator -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 72149.23 Da        Isoelectric Point: 8.9363

>NTDB_id=728704 N3115_RS03645 WP_152019302.1 706211..708061(-) (uvrC) [Aliarcobacter butzleri strain P1200]
MNLQEKLQQLPNDAGVYQYFDKNGHLLYIGKAKILKNRVKSYFKFTPKLQPADKLSPRIYKMISEVESCEWIVVPNEHDA
LILENSLIKQLKPKYNILLRDDKTYPYIFVDFDEDFPRLDITRRIQKSKSIKYFGPYSTGARDMLDSIYEIVPLVQKKSC
VKGKKACLFHQIQKCLAPCENKISKEEYAKIVENALEYIYNKTKLISKLNEKMIQYSNDFRFEEAMTLRDRIKTIEKSQI
KSGIDLATNEDIDIFAINANNKKAVIVRMFLRNGKLTSSSHDFLKIDNFDEEFEFDYQEAYERAIINYYDNEIPLLPKEI
LIAHELEITNELEEFLHTRFNKKIKLINPKKDKKREIVNIALNNCDELLRIENSKNQTSIYEELKELFNLQTVPYLIESF
DNSHMMGQATVGAMIVWNENLNAFDKKAFRHYNLESKDEYSQMKEMLIRRVESFEKNPAPDLWIIDGGETLLKLAFDIVE
SVGVNLDIIAVAKEKIDAKAHRAKGSAKDIIHYKTKNGEFKSFNLLTSDKRLQFVQRQRDEAHRFAITFHKKQKRAQDKQ
ISLLQIKGIGEAKIKKLLLYFGEFEKIRKASLDELKTVLNEKDASTILDYFTNFKD

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=728704 N3115_RS03645 WP_152019302.1 706211..708061(-) (uvrC) [Aliarcobacter butzleri strain P1200]
ATGAATTTACAAGAAAAGCTACAACAACTTCCTAATGATGCGGGAGTTTATCAATACTTTGACAAAAATGGTCATTTACT
TTATATAGGAAAAGCAAAAATTCTAAAAAATAGAGTTAAATCCTATTTTAAATTTACTCCAAAACTACAACCAGCAGATA
AATTAAGTCCAAGAATTTATAAAATGATTAGCGAAGTGGAAAGTTGCGAATGGATTGTTGTACCAAATGAACACGATGCT
TTAATTCTTGAAAACTCTTTAATCAAACAATTAAAACCAAAATATAATATTTTACTTCGAGATGATAAAACTTATCCATA
TATTTTTGTAGATTTTGATGAAGATTTTCCAAGACTTGATATAACTAGAAGAATTCAAAAAAGTAAAAGTATCAAATATT
TTGGACCATACTCAACTGGTGCTAGAGATATGCTTGATTCTATTTATGAAATAGTTCCACTAGTACAAAAGAAATCTTGT
GTAAAGGGTAAAAAAGCCTGTCTTTTCCATCAAATACAAAAATGTTTAGCACCTTGTGAAAATAAAATCTCAAAAGAAGA
GTATGCAAAAATAGTTGAAAATGCTTTAGAGTACATATATAATAAAACAAAACTAATTTCAAAACTAAATGAAAAAATGA
TTCAATATTCAAATGATTTTAGATTTGAAGAAGCAATGACTTTAAGAGATAGAATAAAAACTATTGAAAAATCTCAAATA
AAATCTGGTATTGATTTAGCAACAAATGAAGATATTGATATTTTTGCAATAAATGCAAATAATAAAAAAGCTGTAATAGT
AAGGATGTTTTTAAGAAATGGTAAATTAACTTCATCAAGTCATGATTTTTTAAAAATAGATAACTTTGATGAAGAGTTCG
AATTTGATTATCAAGAAGCTTATGAAAGAGCAATTATTAACTACTATGATAATGAAATTCCTCTTTTACCAAAAGAGATT
TTGATTGCGCATGAACTTGAAATTACAAATGAATTAGAAGAGTTTTTACATACAAGATTTAACAAAAAGATTAAACTAAT
CAATCCTAAAAAAGATAAAAAAAGAGAGATTGTAAATATAGCTTTAAATAACTGTGATGAATTATTAAGAATTGAAAATT
CAAAAAATCAAACATCAATTTATGAAGAACTAAAAGAGTTGTTTAATCTTCAAACTGTTCCATATTTAATAGAGAGTTTT
GATAACTCTCATATGATGGGACAAGCAACAGTTGGAGCAATGATAGTTTGGAATGAAAATTTAAATGCTTTTGATAAAAA
AGCTTTTAGACATTATAATCTTGAATCAAAAGATGAATACTCTCAAATGAAAGAGATGTTAATAAGAAGAGTTGAAAGTT
TTGAAAAAAATCCCGCTCCTGATTTATGGATAATAGATGGTGGAGAAACTTTACTAAAATTAGCTTTTGATATAGTGGAA
TCTGTTGGTGTAAATCTTGATATAATTGCAGTCGCAAAAGAAAAAATTGATGCAAAAGCCCATAGAGCAAAAGGGAGTGC
AAAAGATATAATTCACTATAAAACAAAAAATGGTGAATTTAAAAGTTTTAACTTATTAACAAGTGATAAAAGACTACAAT
TCGTTCAAAGACAAAGAGACGAAGCTCATAGATTTGCAATAACTTTTCATAAAAAGCAAAAAAGAGCACAAGATAAACAA
ATCTCTTTATTACAAATCAAAGGTATTGGTGAAGCAAAAATCAAAAAGCTTCTTTTATATTTTGGAGAATTTGAAAAAAT
TAGAAAAGCATCATTAGATGAGCTAAAAACTGTTTTAAACGAAAAAGATGCAAGTACAATTTTAGATTATTTTACTAATT
TCAAGGATTAA

Domains

Predicted by InterproScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(385-547)

GIY-YIG catalytic domain (GIY-YIG)

(15-96)

UvrB/uvrC motif (UVR)

(204-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

52.239

97.89

0.511